Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIR518F-201ENST00000384973 87 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 MIR517A-201ENST00000385001 87 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 RNU7-74P-201ENST00000459104 62 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 SNORA70.25-201ENST00000612741 95 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 AC007494.3-201ENST00000624660 743 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 AC006927.3-201ENST00000638789 384 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 MIR342-201ENST00000362212 99 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 RNU6-949P-201ENST00000384040 107 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 SNORD77.3-201ENST00000391113 65 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 CYCSP46-201ENST00000423569 204 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 Z82188.1-201ENST00000436709 154 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 MTCO2P16-201ENST00000436962 677 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 SNORD42A-201ENST00000459584 64 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 AC091179.3-201ENST00000474761 144 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 RNU7-116P-201ENST00000516940 62 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 AP002963.1-201ENST00000530590 184 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 MIR4703-201ENST00000577728 79 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 MIR6507-201ENST00000613630 70 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 MIR6851-201ENST00000617060 67 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 AC099654.12-201ENST00000639868 649 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 MIR302B-201ENST00000362188 73 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 SNORD114-7-201ENST00000362520 77 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 RNA5SP133-201ENST00000363368 119 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 RNU6-413P-201ENST00000384115 107 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 RNU6-1199P-201ENST00000411249 104 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 RNU6-693P-201ENST00000516134 107 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 RNA5SP169-201ENST00000517268 117 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 DEFB131E-201ENST00000532329 154 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 AL356055.1-201ENST00000602528 446 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 CLPTM1LP1-201ENST00000604519 484 ntBASIC-0.66□□□□□ -2.51
CHD9Q3L8U1 RNU1-141P-201ENST00000364623 158 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 RNU6-1292P-201ENST00000383856 107 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 RNU6-136P-201ENST00000384663 107 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 RNU6-1165P-201ENST00000410119 107 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 UBE2D3P4-201ENST00000441973 436 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 SNORA13-201ENST00000458790 133 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 AC011352.1-201ENST00000512300 793 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 RNU6-966P-201ENST00000516479 104 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 RNU7-161P-201ENST00000517289 62 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 MIR6502-201ENST00000617296 76 ntBASIC-0.66□□□□□ -2.52
CHD9Q3L8U1 SNORA72.3-201ENST00000365074 132 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AL606923.1-201ENST00000406616 190 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AC104850.1-201ENST00000435940 476 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 TPTE2P5-203ENST00000458118 728 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AP000240.1-201ENST00000609910 452 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 Y_RNA.159-201ENST00000363674 87 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 SNORD115-30-201ENST00000364117 82 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 RNU6-702P-201ENST00000364982 107 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 SNORA26.5-201ENST00000391215 123 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AL031003.1-201ENST00000404229 172 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 RNU2-72P-201ENST00000411175 163 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AC009961.2-201ENST00000435771 251 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 MIR5583-1-201ENST00000580941 59 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AC007671.2-201ENST00000637344 619 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 RNY1P16-201ENST00000363063 111 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 RNU6-268P-201ENST00000364174 107 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 RNY4P34-201ENST00000364779 95 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 MIR588-201ENST00000384900 83 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 RNU4-83P-201ENST00000410863 133 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 MTND3P8-201ENST00000412909 339 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 snoU13.13-201ENST00000458842 104 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AC022137.1-201ENST00000483735 151 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 PRDX4P1-201ENST00000507189 574 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AC138749.4-201ENST00000563970 127 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 AC018714.1-201ENST00000605028 208 ntBASIC-0.67□□□□□ -2.52
CHD9Q3L8U1 RNU6-228P-201ENST00000362700 106 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 SNORD115-32-201ENST00000364079 82 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 RNU6-318P-201ENST00000384283 103 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 SNORA27-201ENST00000384323 126 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 SNORA72.6-201ENST00000384520 129 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 Y_RNA.566-201ENST00000384735 101 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 SNORD37.1-201ENST00000390968 65 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 RNU2-29P-201ENST00000410423 189 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 RNU6-195P-201ENST00000411352 109 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 U8.19-201ENST00000459095 133 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 U8.22-201ENST00000459141 133 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 MIR4280-201ENST00000582178 76 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 AL158050.2-201ENST00000605336 568 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 Y_RNA.38-201ENST00000362617 102 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 RNU6-181P-201ENST00000363225 107 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 Y_RNA.547-201ENST00000384654 119 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 Y_RNA.588-201ENST00000391254 102 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 RNU6-757P-201ENST00000410334 100 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 RNU6-445P-201ENST00000516949 107 ntBASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.68□□□□□ -2.52
CHD9Q3L8U1 AP003357.1-201ENST00000604497 148 ntBASIC-0.68□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 651.6 ms