Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Y_RNA.277-201ENST00000364754 102 ntBASIC1.37□□□□□ -2.19
COL28A1Q2UY09 MIR802-201ENST00000390235 94 ntBASIC1.37□□□□□ -2.19
COL28A1Q2UY09 HMGN1P33-201ENST00000432945 451 ntBASIC1.37□□□□□ -2.19
COL28A1Q2UY09 SNORD77.4-201ENST00000516158 81 ntBASIC1.37□□□□□ -2.19
COL28A1Q2UY09 RNU6-268P-201ENST00000364174 107 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 RNY3P5-201ENST00000384127 102 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 SNORD38C-201ENST00000384381 69 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 MIR320A-201ENST00000385302 82 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 SNORD72-201ENST00000390994 80 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.36□□□□□ -2.19
COL28A1Q2UY09 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.36□□□□□ -2.19
COL28A1Q2UY09 AC245047.8-201ENST00000456455 284 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 MTND1P19-201ENST00000511780 315 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 RNU6-1023P-201ENST00000516137 106 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 SNORA74.3-201ENST00000517108 154 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 RNU6-165P-201ENST00000517170 99 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 AL365265.1-201ENST00000621045 234 ntBASIC1.36□□□□□ -2.19
COL28A1Q2UY09 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
COL28A1Q2UY09 Y_RNA.24-201ENST00000362508 103 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 Y_RNA.54-201ENST00000362766 105 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 Y_RNA.76-201ENST00000362931 109 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 RNU6-653P-201ENST00000363074 106 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 Y_RNA.229-201ENST00000364347 113 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 RNU4-10P-201ENST00000364383 140 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 Y_RNA.262-201ENST00000364641 102 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 RNU2-55P-201ENST00000411146 174 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.35□□□□□ -2.19
COL28A1Q2UY09 RNU7-149P-201ENST00000516739 59 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 CYP3A52P-201ENST00000563326 91 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 AP001485.1-201ENST00000604799 199 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.35□□□□□ -2.19
COL28A1Q2UY09 Y_RNA.292-201ENST00000364904 97 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 SNORD26-201ENST00000384147 75 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 Y_RNA.539-201ENST00000384635 107 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 MIR516B2-201ENST00000385190 85 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 RN7SKP88-201ENST00000516847 250 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 AL160236.1-201ENST00000556317 195 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 AL049861.1-201ENST00000603130 150 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 7SK.8-201ENST00000612110 250 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 AL391903.3-201ENST00000612158 163 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 7SK.11-201ENST00000615477 250 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 7SK.13-201ENST00000622040 250 ntBASIC1.34□□□□□ -2.19
COL28A1Q2UY09 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
COL28A1Q2UY09 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.68-201ENST00000362881 102 ntBASIC1.33□□□□□ -2.2
COL28A1Q2UY09 MIR216A-201ENST00000385063 110 ntBASIC1.33□□□□□ -2.2
COL28A1Q2UY09 MIR616-201ENST00000385293 97 ntBASIC1.33□□□□□ -2.2
COL28A1Q2UY09 RNU6-1054P-201ENST00000411293 104 ntBASIC1.33□□□□□ -2.2
COL28A1Q2UY09 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.33□□□□□ -2.2
COL28A1Q2UY09 SNORD116-28-201ENST00000516123 91 ntBASIC1.33□□□□□ -2.2
COL28A1Q2UY09 RNA5SP61-201ENST00000516453 100 ntBASIC1.33□□□□□ -2.2
COL28A1Q2UY09 RNU7-43P-201ENST00000516554 64 ntBASIC1.33□□□□□ -2.2
COL28A1Q2UY09 RNY4P28-201ENST00000365281 93 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 RNU4-17P-201ENST00000365598 141 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.447-201ENST00000384184 113 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 RNU6-381P-201ENST00000391259 108 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 RPL39P39-201ENST00000455840 151 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.32□□□□□ -2.2
COL28A1Q2UY09 RN7SKP164-201ENST00000516138 266 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 RNU4-71P-201ENST00000516258 113 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 SNORD111.1-201ENST00000516421 86 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 MIR3128-201ENST00000581957 66 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 Pinc.1-201ENST00000616452 154 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 MIR8065-201ENST00000620577 100 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 MIR6767-201ENST00000637302 66 ntBASIC1.32□□□□□ -2.2
COL28A1Q2UY09 SNORD27-201ENST00000363981 72 ntBASIC1.31□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.251-201ENST00000364551 99 ntBASIC1.31□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.307-201ENST00000365022 117 ntBASIC1.31□□□□□ -2.2
COL28A1Q2UY09 RNU6-574P-201ENST00000384265 107 ntBASIC1.31□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.572-201ENST00000384757 98 ntBASIC1.31□□□□□ -2.2
COL28A1Q2UY09 RNU6-1228P-201ENST00000391014 107 ntBASIC1.31□□□□□ -2.2
COL28A1Q2UY09 SNORD123-201ENST00000459473 70 ntBASIC1.31□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.680-201ENST00000516441 93 ntBASIC1.31□□□□□ -2.2
COL28A1Q2UY09 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
COL28A1Q2UY09 snoU2_19.4-201ENST00000364329 80 ntBASIC1.3□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.587-201ENST00000391210 103 ntBASIC1.3□□□□□ -2.2
COL28A1Q2UY09 SNRPGP13-201ENST00000442212 177 ntBASIC1.3□□□□□ -2.2
COL28A1Q2UY09 RPS29P23-201ENST00000458635 123 ntBASIC1.3□□□□□ -2.2
COL28A1Q2UY09 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
COL28A1Q2UY09 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.3□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.60-201ENST00000362831 98 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 U8.1-201ENST00000362843 134 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 RNU6-103P-201ENST00000363686 107 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 SNORA20.1-201ENST00000364790 130 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 SNORD24-201ENST00000383884 75 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.477-201ENST00000384352 108 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 MT-TG-201ENST00000387429 68 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 SNORA26-201ENST00000391286 122 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.618-201ENST00000410949 107 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 RNA5SP153-201ENST00000516498 76 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 SNORA18.7-201ENST00000516910 131 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.29□□□□□ -2.2
COL28A1Q2UY09 AC097639.2-201ENST00000603159 172 ntBASIC1.29□□□□□ -2.2
COL28A1Q2UY09 AL161722.3-201ENST00000605789 2983 ntBASIC1.28□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.401-201ENST00000383965 117 ntBASIC1.28□□□□□ -2.2
COL28A1Q2UY09 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.28□□□□□ -2.2
COL28A1Q2UY09 SCARNA8-201ENST00000515924 131 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 206.1 ms