Protein–RNA interactions for Protein: Q15393

SF3B3, Splicing factor 3B subunit 3, humanhuman

Known RBP Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3Q15393 MIR539-201ENST00000365690 78 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 SNORD24-201ENST00000383884 75 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 RNU6-1168P-201ENST00000390831 104 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 Y_RNA.584-201ENST00000391090 114 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 RNA5SP482-201ENST00000391269 118 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 RNU6-321P-201ENST00000410912 106 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.06□□□□□ -2.08
SF3B3Q15393 RNU6-504P-201ENST00000516568 104 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 RNU7-28P-201ENST00000516759 62 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 AP001328.1-201ENST00000528550 176 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 DNAJC19P9-201ENST00000555084 351 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.06□□□□□ -2.08
SF3B3Q15393 AL365222.1-201ENST00000614661 98 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 MIR8054-201ENST00000620877 86 ntBASIC2.06□□□□□ -2.08
SF3B3Q15393 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
SF3B3Q15393 RNU6-888P-201ENST00000363010 101 ntBASIC2.05□□□□□ -2.08
SF3B3Q15393 SNORD68-201ENST00000363214 84 ntBASIC2.05□□□□□ -2.08
SF3B3Q15393 RNU6-915P-201ENST00000364943 103 ntBASIC2.05□□□□□ -2.08
SF3B3Q15393 SNORD48-201ENST00000364953 64 ntBASIC2.05□□□□□ -2.08
SF3B3Q15393 SNORD61-201ENST00000384252 73 ntBASIC2.05□□□□□ -2.08
SF3B3Q15393 RNU6-440P-201ENST00000390882 105 ntBASIC2.05□□□□□ -2.08
SF3B3Q15393 RNA5SP247-201ENST00000411181 105 ntBASIC2.05□□□□□ -2.08
SF3B3Q15393 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.05□□□□□ -2.08
SF3B3Q15393 AC131055.1-201ENST00000584626 316 ntBASIC2.05□□□□□ -2.08
SF3B3Q15393 MIR4781-201ENST00000585250 76 ntBASIC2.05□□□□□ -2.08
SF3B3Q15393 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SF3B3Q15393 Y_RNA.71-201ENST00000362892 104 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 SNORA63D-201ENST00000364359 132 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 SNORA1-201ENST00000384107 130 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 SNORA22C-201ENST00000384614 134 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 MIR548A2-201ENST00000384956 97 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 MIR624-201ENST00000385217 97 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SF3B3Q15393 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SF3B3Q15393 SNORA48.1-201ENST00000390879 135 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 RNU6-1154P-201ENST00000391001 104 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.04□□□□□ -2.08
SF3B3Q15393 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.04□□□□□ -2.08
SF3B3Q15393 AC069257.2-201ENST00000441819 155 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 RNU6-1211P-201ENST00000459179 105 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 Y_RNA.666-201ENST00000516187 112 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 RNU6-313P-201ENST00000516317 112 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 RNVU1-2-201ENST00000516326 135 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 SNORA31.10-201ENST00000516482 106 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 RNA5SP364-201ENST00000516938 78 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 MIR3618-201ENST00000580330 88 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 U7.2-201ENST00000607576 63 ntBASIC2.04□□□□□ -2.08
SF3B3Q15393 Y_RNA.265-201ENST00000364677 108 ntBASIC2.03□□□□□ -2.08
SF3B3Q15393 RNA5SP127-201ENST00000411051 133 ntBASIC2.03□□□□□ -2.08
SF3B3Q15393 RPL31P63-201ENST00000422565 375 ntBASIC2.03□□□□□ -2.08
SF3B3Q15393 AC008267.6-201ENST00000441664 139 ntBASIC2.03□□□□□ -2.08
SF3B3Q15393 SNRPGP13-201ENST00000442212 177 ntBASIC2.03□□□□□ -2.08
SF3B3Q15393 RNU7-95P-201ENST00000459222 64 ntBASIC2.03□□□□□ -2.08
SF3B3Q15393 SUB1P4-201ENST00000566062 339 ntBASIC2.03□□□□□ -2.08
SF3B3Q15393 AC012493.3-201ENST00000604494 112 ntBASIC2.03□□□□□ -2.08
SF3B3Q15393 AL359821.1-201ENST00000605519 182 ntBASIC2.03□□□□□ -2.08
SF3B3Q15393 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.03□□□□□ -2.08
SF3B3Q15393 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.03□□□□□ -2.09
SF3B3Q15393 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.02□□□□□ -2.09
SF3B3Q15393 U8.1-201ENST00000362843 134 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 Y_RNA.120-201ENST00000363304 110 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 Y_RNA.127-201ENST00000363386 109 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 SNORD116-14-201ENST00000383894 92 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 SNORD116-17-201ENST00000383929 92 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 RNU6-80P-201ENST00000384195 107 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 SNORD116-15-201ENST00000384445 92 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 SNORD116-19-201ENST00000384729 92 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 SNRPGP14-201ENST00000435400 219 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 Y_RNA.686-201ENST00000516548 134 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 RNU6-1234P-201ENST00000516877 103 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 RNU6-1270P-201ENST00000517128 108 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 RNU2-60P-201ENST00000517290 128 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.02□□□□□ -2.09
SF3B3Q15393 AL645939.4-201ENST00000604495 135 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 AC011603.4-201ENST00000611325 277 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 AC006441.5-201ENST00000612680 209 ntBASIC2.02□□□□□ -2.09
SF3B3Q15393 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.02□□□□□ -2.09
SF3B3Q15393 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
SF3B3Q15393 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
SF3B3Q15393 MIRLET7C-201ENST00000362160 84 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 RNU6-1084P-201ENST00000362498 107 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 SNORD14E-201ENST00000364009 85 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 RNU6-60P-201ENST00000364792 103 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 snoU2-30.1-201ENST00000365012 70 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 RNU6-1292P-201ENST00000383856 107 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 RNU6-442P-201ENST00000383968 104 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 MIR518F-201ENST00000384973 87 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 RNA5SP212-201ENST00000391223 107 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 MIR891A-201ENST00000401237 79 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 RNA5SP501-201ENST00000410990 112 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 HSPE1P9-201ENST00000440046 311 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 STAG3L5P-204ENST00000443759 179 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 RNU6-693P-201ENST00000516134 107 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 SNORA18.4-201ENST00000516440 124 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 SNORD45.4-201ENST00000516629 73 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 MIR3129-201ENST00000581095 76 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 SNORA28-201ENST00000606769 126 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 AL512598.1-201ENST00000610158 273 ntBASIC2.01□□□□□ -2.09
SF3B3Q15393 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SF3B3Q15393 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms