Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR548I3-201ENST00000408378 149 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 MIR548I1-201ENST00000408810 149 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.33□□□□□ -2.2
HOXA1P49639 AF228730.3-201ENST00000436691 102 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 RPS29P23-201ENST00000458635 123 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 UBL5P3-201ENST00000475112 231 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 RNA5SP153-201ENST00000516498 76 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 RNU6-504P-201ENST00000516568 104 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 SNORD36C-201ENST00000516733 66 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 MIR378D2-201ENST00000580636 98 ntBASIC1.33□□□□□ -2.2
HOXA1P49639 AP000648.3-201ENST00000623539 4507 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
HOXA1P49639 RNU6-888P-201ENST00000363010 101 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 Y_RNA.272-201ENST00000364696 102 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 Y_RNA.357-201ENST00000365487 109 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 Y_RNA.398-201ENST00000383952 99 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 MIR136-201ENST00000385207 82 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 SNORA26.9-201ENST00000391322 122 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 snoU13.15-201ENST00000459407 104 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 RN7SL429P-201ENST00000479090 223 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 RN7SL489P-201ENST00000486185 223 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 RN7SL327P-201ENST00000488659 223 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 AC079140.2-201ENST00000506193 142 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.32□□□□□ -2.2
HOXA1P49639 AC107027.2-201ENST00000512197 115 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 RNU4-57P-201ENST00000515980 135 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 MIR3937-201ENST00000580135 106 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.32□□□□□ -2.2
HOXA1P49639 MIR502-201ENST00000606349 86 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 RN7SL853P-201ENST00000617250 223 ntBASIC1.32□□□□□ -2.2
HOXA1P49639 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.31□□□□□ -2.2
HOXA1P49639 RNU6-1082P-201ENST00000364574 107 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 SNORD24-201ENST00000383884 75 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 SNORD116-18-201ENST00000383961 92 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 Y_RNA.441-201ENST00000384123 112 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 MIR653-201ENST00000385279 96 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 SNORA40.18-201ENST00000391200 128 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 RNU6-938P-201ENST00000411285 103 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.31□□□□□ -2.2
HOXA1P49639 SNORD123-201ENST00000459473 70 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 RNU6-947P-201ENST00000516264 106 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 RNU6-255P-201ENST00000516957 105 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 MIR4255-201ENST00000579351 72 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 MIR548AR-201ENST00000582191 57 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.31□□□□□ -2.2
HOXA1P49639 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
HOXA1P49639 Y_RNA.37-201ENST00000362606 108 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 SNORD115-28-201ENST00000363931 81 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 SNORA2.2-201ENST00000365473 135 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 U8.13-201ENST00000390842 128 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 RNU6-239P-201ENST00000390990 99 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 SNORD77.3-201ENST00000391113 65 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 U8.17-201ENST00000391292 132 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 RNU6-588P-201ENST00000410281 105 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 RNU6-394P-201ENST00000410735 107 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 RPS27P16-201ENST00000425758 201 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 snoU13.26-201ENST00000459452 105 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 AC023790.1-201ENST00000482174 347 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 SNORD116-25-201ENST00000516517 92 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 RNU6-295P-201ENST00000516901 104 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
HOXA1P49639 AC090049.2-201ENST00000550377 109 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 MIR3144-201ENST00000579460 79 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.3□□□□□ -2.2
HOXA1P49639 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.3□□□□□ -2.2
HOXA1P49639 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
HOXA1P49639 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.29□□□□□ -2.2
HOXA1P49639 Y_RNA.180-201ENST00000363867 113 ntBASIC1.29□□□□□ -2.2
HOXA1P49639 RNU1-42P-201ENST00000364033 160 ntBASIC1.29□□□□□ -2.2
HOXA1P49639 MIR320A-201ENST00000385302 82 ntBASIC1.29□□□□□ -2.2
HOXA1P49639 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
HOXA1P49639 AL451046.2-201ENST00000403074 277 ntBASIC1.29□□□□□ -2.2
HOXA1P49639 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.29□□□□□ -2.2
HOXA1P49639 AC027119.1-201ENST00000440877 241 ntBASIC1.29□□□□□ -2.2
HOXA1P49639 AL442644.1-201ENST00000454390 3105 ntBASIC1.29□□□□□ -2.2
HOXA1P49639 RNU6-151P-201ENST00000364158 107 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 Y_RNA.241-201ENST00000364470 117 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 Y_RNA.393-201ENST00000383936 102 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 SNORA26-201ENST00000391286 122 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 SNX2P2-201ENST00000424553 323 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 RNU7-41P-201ENST00000515917 61 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 RNA5SP272-201ENST00000516095 111 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 SNORA74.3-201ENST00000517108 154 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 BX248123.2-201ENST00000606318 124 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 AL096861.1-201ENST00000610899 123 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 MIR8081-201ENST00000611533 95 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
HOXA1P49639 MTND5P32-201ENST00000560711 1802 ntBASIC1.28□□□□□ -2.2
HOXA1P49639 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.28□□□□□ -2.2
HOXA1P49639 RNU6-774P-201ENST00000363238 107 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 Y_RNA.170-201ENST00000363746 110 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 RNU4-11P-201ENST00000365287 132 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 Y_RNA.337-201ENST00000365312 102 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 SNORD37.2-201ENST00000391075 66 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 RNU6-346P-201ENST00000516288 111 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 RNU6-830P-201ENST00000516353 107 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 SNORD111.1-201ENST00000516421 86 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 RNU7-121P-201ENST00000516604 62 ntBASIC1.27□□□□□ -2.21
HOXA1P49639 AP003484.1-201ENST00000530974 250 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 186.3 ms