Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 SNORD28B-201ENST00000390993 75 ntBASIC1.19□□□□□ -2.22
MSH2P43246 U8.17-201ENST00000391292 132 ntBASIC1.19□□□□□ -2.22
MSH2P43246 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.19□□□□□ -2.22
MSH2P43246 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.19□□□□□ -2.22
MSH2P43246 MTND1P19-201ENST00000511780 315 ntBASIC1.19□□□□□ -2.22
MSH2P43246 MIR548AR-201ENST00000582191 57 ntBASIC1.19□□□□□ -2.22
MSH2P43246 MIR6078-201ENST00000611069 100 ntBASIC1.19□□□□□ -2.22
MSH2P43246 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.19□□□□□ -2.22
MSH2P43246 Y_RNA.20-201ENST00000362479 113 ntBASIC1.18□□□□□ -2.22
MSH2P43246 SNORD27-201ENST00000363981 72 ntBASIC1.18□□□□□ -2.22
MSH2P43246 RNU6-702P-201ENST00000364982 107 ntBASIC1.18□□□□□ -2.22
MSH2P43246 Y_RNA.477-201ENST00000384352 108 ntBASIC1.18□□□□□ -2.22
MSH2P43246 MIR616-201ENST00000385293 97 ntBASIC1.18□□□□□ -2.22
MSH2P43246 AL591704.2-201ENST00000421658 181 ntBASIC1.18□□□□□ -2.22
MSH2P43246 RNU4-57P-201ENST00000515980 135 ntBASIC1.18□□□□□ -2.22
MSH2P43246 RNU7-25P-201ENST00000516544 62 ntBASIC1.18□□□□□ -2.22
MSH2P43246 MIR3149-201ENST00000584629 83 ntBASIC1.18□□□□□ -2.22
MSH2P43246 PRELID3BP2-201ENST00000605362 201 ntBASIC1.18□□□□□ -2.22
MSH2P43246 7SK.10-201ENST00000621414 298 ntBASIC1.18□□□□□ -2.22
MSH2P43246 Y_RNA.193-201ENST00000363979 102 ntBASIC1.17□□□□□ -2.22
MSH2P43246 Y_RNA.262-201ENST00000364641 102 ntBASIC1.17□□□□□ -2.22
MSH2P43246 Y_RNA.363-201ENST00000365529 113 ntBASIC1.17□□□□□ -2.22
MSH2P43246 RNY3P5-201ENST00000384127 102 ntBASIC1.17□□□□□ -2.22
MSH2P43246 RNU6-574P-201ENST00000384265 107 ntBASIC1.17□□□□□ -2.22
MSH2P43246 RNU6-463P-201ENST00000384340 107 ntBASIC1.17□□□□□ -2.22
MSH2P43246 Y_RNA.478-201ENST00000384358 107 ntBASIC1.17□□□□□ -2.22
MSH2P43246 Y_RNA.539-201ENST00000384635 107 ntBASIC1.17□□□□□ -2.22
MSH2P43246 Y_RNA.547-201ENST00000384654 119 ntBASIC1.17□□□□□ -2.22
MSH2P43246 MT-TT-201ENST00000387460 66 ntBASIC1.17□□□□□ -2.22
MSH2P43246 RNU6-381P-201ENST00000391259 108 ntBASIC1.17□□□□□ -2.22
MSH2P43246 SNORD58.1-201ENST00000391313 66 ntBASIC1.17□□□□□ -2.22
MSH2P43246 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.17□□□□□ -2.22
MSH2P43246 MIR548O-201ENST00000408583 114 ntBASIC1.17□□□□□ -2.22
MSH2P43246 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.17□□□□□ -2.22
MSH2P43246 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.17□□□□□ -2.22
MSH2P43246 SCARNA8-201ENST00000515924 131 ntBASIC1.17□□□□□ -2.22
MSH2P43246 Y_RNA.666-201ENST00000516187 112 ntBASIC1.17□□□□□ -2.22
MSH2P43246 Y_RNA.673-201ENST00000516306 88 ntBASIC1.17□□□□□ -2.22
MSH2P43246 RNU6-126P-201ENST00000516685 103 ntBASIC1.17□□□□□ -2.22
MSH2P43246 RNU7-181P-201ENST00000517234 74 ntBASIC1.17□□□□□ -2.22
MSH2P43246 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.17□□□□□ -2.22
MSH2P43246 MIR3128-201ENST00000581957 66 ntBASIC1.17□□□□□ -2.22
MSH2P43246 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
MSH2P43246 Y_RNA.144-201ENST00000363521 113 ntBASIC1.16□□□□□ -2.22
MSH2P43246 RNU1-124P-201ENST00000363861 145 ntBASIC1.16□□□□□ -2.22
MSH2P43246 Y_RNA.327-201ENST00000365201 102 ntBASIC1.16□□□□□ -2.22
MSH2P43246 RNU2-55P-201ENST00000411146 174 ntBASIC1.16□□□□□ -2.22
MSH2P43246 RPS29P28-201ENST00000446439 141 ntBASIC1.16□□□□□ -2.22
MSH2P43246 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.16□□□□□ -2.22
MSH2P43246 RNU6-1053P-201ENST00000515930 101 ntBASIC1.16□□□□□ -2.22
MSH2P43246 Y_RNA.680-201ENST00000516441 93 ntBASIC1.16□□□□□ -2.22
MSH2P43246 RNU6-453P-201ENST00000516819 85 ntBASIC1.16□□□□□ -2.22
MSH2P43246 AL359821.1-201ENST00000605519 182 ntBASIC1.16□□□□□ -2.22
MSH2P43246 AC008133.2-201ENST00000624540 351 ntBASIC1.16□□□□□ -2.22
MSH2P43246 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.22
MSH2P43246 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
MSH2P43246 RNA5SP48-201ENST00000363969 126 ntBASIC1.15□□□□□ -2.23
MSH2P43246 Y_RNA.269-201ENST00000364685 89 ntBASIC1.15□□□□□ -2.23
MSH2P43246 RNY4P28-201ENST00000365281 93 ntBASIC1.15□□□□□ -2.23
MSH2P43246 RNU4-17P-201ENST00000365598 141 ntBASIC1.15□□□□□ -2.23
MSH2P43246 RNU6-1228P-201ENST00000391014 107 ntBASIC1.15□□□□□ -2.23
MSH2P43246 AL606845.1-201ENST00000404881 255 ntBASIC1.15□□□□□ -2.23
MSH2P43246 AP003716.2-201ENST00000528260 108 ntBASIC1.15□□□□□ -2.23
MSH2P43246 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.15□□□□□ -2.23
MSH2P43246 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.14□□□□□ -2.23
MSH2P43246 Y_RNA.65-201ENST00000362846 100 ntBASIC1.14□□□□□ -2.23
MSH2P43246 RNA5SP264-201ENST00000363115 107 ntBASIC1.14□□□□□ -2.23
MSH2P43246 SNORA1.2-201ENST00000365189 134 ntBASIC1.14□□□□□ -2.23
MSH2P43246 SNORD24-201ENST00000383884 75 ntBASIC1.14□□□□□ -2.23
MSH2P43246 RNU6-484P-201ENST00000384016 107 ntBASIC1.14□□□□□ -2.23
MSH2P43246 SNRPGP8-201ENST00000454064 226 ntBASIC1.14□□□□□ -2.23
MSH2P43246 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.14□□□□□ -2.23
MSH2P43246 RPS23P4-201ENST00000487908 423 ntBASIC1.14□□□□□ -2.23
MSH2P43246 TRMT112P2-201ENST00000512910 132 ntBASIC1.14□□□□□ -2.23
MSH2P43246 SNORD79.1-201ENST00000516069 84 ntBASIC1.14□□□□□ -2.23
MSH2P43246 RNU6-1299P-201ENST00000516316 100 ntBASIC1.14□□□□□ -2.23
MSH2P43246 AC007751.1-201ENST00000529260 376 ntBASIC1.14□□□□□ -2.23
MSH2P43246 MIR337-201ENST00000362281 93 ntBASIC1.13□□□□□ -2.23
MSH2P43246 Y_RNA.60-201ENST00000362831 98 ntBASIC1.13□□□□□ -2.23
MSH2P43246 RNY1P10-201ENST00000363268 113 ntBASIC1.13□□□□□ -2.23
MSH2P43246 Y_RNA.307-201ENST00000365022 117 ntBASIC1.13□□□□□ -2.23
MSH2P43246 Y_RNA.370-201ENST00000365589 108 ntBASIC1.13□□□□□ -2.23
MSH2P43246 Y_RNA.447-201ENST00000384184 113 ntBASIC1.13□□□□□ -2.23
MSH2P43246 SNORA80D-201ENST00000384488 135 ntBASIC1.13□□□□□ -2.23
MSH2P43246 RNU6-1067P-201ENST00000384752 107 ntBASIC1.13□□□□□ -2.23
MSH2P43246 MIR570-201ENST00000384917 97 ntBASIC1.13□□□□□ -2.23
MSH2P43246 SNORD12-201ENST00000391002 90 ntBASIC1.13□□□□□ -2.23
MSH2P43246 SNORA26-201ENST00000391286 122 ntBASIC1.13□□□□□ -2.23
MSH2P43246 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.13□□□□□ -2.23
MSH2P43246 AC063976.4-201ENST00000421971 163 ntBASIC1.13□□□□□ -2.23
MSH2P43246 RPS26P48-201ENST00000491713 339 ntBASIC1.13□□□□□ -2.23
MSH2P43246 RNU6-693P-201ENST00000516134 107 ntBASIC1.13□□□□□ -2.23
MSH2P43246 RNU6-1023P-201ENST00000516137 106 ntBASIC1.13□□□□□ -2.23
MSH2P43246 RNU6-365P-201ENST00000517113 106 ntBASIC1.13□□□□□ -2.23
MSH2P43246 MIR4251-201ENST00000635819 61 ntBASIC1.13□□□□□ -2.23
MSH2P43246 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
MSH2P43246 SNORA25.3-201ENST00000363205 127 ntBASIC1.12□□□□□ -2.23
MSH2P43246 Y_RNA.432-201ENST00000384087 111 ntBASIC1.12□□□□□ -2.23
MSH2P43246 SNORD61-201ENST00000384252 73 ntBASIC1.12□□□□□ -2.23
MSH2P43246 MIR548A2-201ENST00000384956 97 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms