Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SNORA40.5-201ENST00000391061 128 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 RNA5SP237-201ENST00000410414 113 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC-1.71□□□□□ -2.68
CUX1P39880 RPS27AP14-201ENST00000422868 454 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 PIGPP4-201ENST00000584447 307 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 SNORD115-40-201ENST00000606510 82 ntBASIC-1.71□□□□□ -2.68
CUX1P39880 RNU6-1029P-201ENST00000384109 107 ntBASIC-1.72□□□□□ -2.69
CUX1P39880 RNU6-281P-201ENST00000384212 103 ntBASIC-1.72□□□□□ -2.69
CUX1P39880 UBE2D3P4-201ENST00000441973 436 ntBASIC-1.72□□□□□ -2.69
CUX1P39880 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC-1.72□□□□□ -2.69
CUX1P39880 AL445584.3-201ENST00000617173 78 ntBASIC-1.72□□□□□ -2.69
CUX1P39880 MIR6502-201ENST00000617296 76 ntBASIC-1.72□□□□□ -2.69
CUX1P39880 SEPT14P19-203ENST00000633205 211 ntBASIC-1.72□□□□□ -2.69
CUX1P39880 MIR410-201ENST00000362222 80 ntBASIC-1.73□□□□□ -2.69
CUX1P39880 MIR20A-201ENST00000362279 71 ntBASIC-1.73□□□□□ -2.69
CUX1P39880 RNU6-454P-201ENST00000364292 107 ntBASIC-1.73□□□□□ -2.69
CUX1P39880 AL603914.1-201ENST00000401964 204 ntBASIC-1.73□□□□□ -2.69
CUX1P39880 Y_RNA.683-201ENST00000516508 93 ntBASIC-1.73□□□□□ -2.69
CUX1P39880 MIR6854-201ENST00000614935 69 ntBASIC-1.73□□□□□ -2.69
CUX1P39880 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.74□□□□□ -2.69
CUX1P39880 SNORD114-17-201ENST00000364699 75 ntBASIC-1.74□□□□□ -2.69
CUX1P39880 SNORA72-201ENST00000384339 132 ntBASIC-1.74□□□□□ -2.69
CUX1P39880 RNU7-74P-201ENST00000459104 62 ntBASIC-1.74□□□□□ -2.69
CUX1P39880 RNU7-167P-201ENST00000459160 62 ntBASIC-1.74□□□□□ -2.69
CUX1P39880 SNORD18.2-201ENST00000459604 70 ntBASIC-1.74□□□□□ -2.69
CUX1P39880 RNU6-334P-201ENST00000517072 102 ntBASIC-1.74□□□□□ -2.69
CUX1P39880 MIR4473-201ENST00000583731 91 ntBASIC-1.74□□□□□ -2.69
CUX1P39880 AC005771.1-201ENST00000585581 349 ntBASIC-1.74□□□□□ -2.69
CUX1P39880 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.74□□□□□ -2.69
CUX1P39880 RNU4-58P-201ENST00000363192 141 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 SNORD115-35-201ENST00000365122 82 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 RNU6-949P-201ENST00000384040 107 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 RNU4-55P-201ENST00000410731 137 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-1.75□□□□□ -2.69
CUX1P39880 Z82188.1-201ENST00000436709 154 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 RNU6-983P-201ENST00000516004 103 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 RNU7-53P-201ENST00000516705 60 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 AC104576.1-201ENST00000524225 88 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 AL442663.2-201ENST00000554385 511 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 AC069503.3-201ENST00000618674 145 ntBASIC-1.75□□□□□ -2.69
CUX1P39880 Y_RNA.241-201ENST00000364470 117 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 Y_RNA.242-201ENST00000364473 110 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 RNU6-413P-201ENST00000384115 107 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 MIR548K-201ENST00000408406 116 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 MTND2P18-201ENST00000419962 1030 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.76□□□□□ -2.69
CUX1P39880 RNA5SP272-201ENST00000516095 111 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 SCARNA24.1-201ENST00000516465 137 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 RNU6-966P-201ENST00000516479 104 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 MTND4LP18-201ENST00000526864 291 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.76□□□□□ -2.69
CUX1P39880 AC008507.2-201ENST00000588402 1176 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 AC011603.4-201ENST00000611325 277 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 AL158063.1-201ENST00000615349 536 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 RNU6-1264P-201ENST00000383891 107 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 Y_RNA.598-201ENST00000410480 95 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-1.76□□□□□ -2.69
CUX1P39880 YWHAEP2-201ENST00000580066 112 ntBASIC-1.76□□□□□ -2.69
CUX1P39880 Y_RNA.653-201ENST00000459091 95 ntBASIC-1.77□□□□□ -2.69
CUX1P39880 RPS29P24-201ENST00000486345 171 ntBASIC-1.77□□□□□ -2.69
CUX1P39880 RNU6-531P-201ENST00000516694 104 ntBASIC-1.77□□□□□ -2.69
CUX1P39880 Y_RNA.97-201ENST00000363094 102 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 RNU6-325P-201ENST00000411132 105 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 AL353813.1-201ENST00000440700 253 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 AC016550.1-201ENST00000505348 785 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 YWHAEP3-201ENST00000582767 121 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 AL353803.5-201ENST00000599815 141 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 CLPTM1LP1-201ENST00000604519 484 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 AC008536.2-201ENST00000607284 349 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 U2.17-201ENST00000611454 95 ntBASIC-1.78□□□□□ -2.69
CUX1P39880 SNORD50.1-201ENST00000362987 71 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 Y_RNA.361-201ENST00000365515 120 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 RNU6-809P-201ENST00000384461 107 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 Y_RNA.547-201ENST00000384654 119 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 MIR521-1-201ENST00000384902 87 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 AC022028.1-201ENST00000412054 408 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-1.79□□□□□ -2.7
CUX1P39880 MIR3920-201ENST00000581751 86 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 AC008507.4-201ENST00000585464 127 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 AC145423.2-201ENST00000610631 239 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 AC007671.2-201ENST00000637344 619 ntBASIC-1.79□□□□□ -2.7
CUX1P39880 RNU6-1329P-201ENST00000365664 107 ntBASIC-1.8□□□□□ -2.7
CUX1P39880 RNU6-606P-201ENST00000384721 111 ntBASIC-1.8□□□□□ -2.7
CUX1P39880 RNU6-410P-201ENST00000517006 107 ntBASIC-1.8□□□□□ -2.7
CUX1P39880 RNU6-1220P-201ENST00000517126 108 ntBASIC-1.8□□□□□ -2.7
CUX1P39880 AC124312.5-201ENST00000604451 268 ntBASIC-1.8□□□□□ -2.7
CUX1P39880 JPX_2.1-201ENST00000614161 69 ntBASIC-1.8□□□□□ -2.7
CUX1P39880 Y_RNA.221-201ENST00000364248 96 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 RNU6-973P-201ENST00000364690 107 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 MIR496-201ENST00000385226 102 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 RNU6-576P-201ENST00000390854 102 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 SNORD77.3-201ENST00000391113 65 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 MIR548H1-201ENST00000408610 102 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 Y_RNA.608-201ENST00000410647 95 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 AC141846.1-201ENST00000568348 142 ntBASIC-1.81□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms