Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.15□□□□□ -2.06
MSX2P35548 AL596028.1-201ENST00000326971 197 ntBASIC2.15□□□□□ -2.07
MSX2P35548 RNU6-690P-201ENST00000365242 106 ntBASIC2.15□□□□□ -2.07
MSX2P35548 AC087499.4-201ENST00000448505 178 ntBASIC2.15□□□□□ -2.07
MSX2P35548 RNU6-412P-201ENST00000516434 106 ntBASIC2.15□□□□□ -2.07
MSX2P35548 RNY4P20-201ENST00000516678 93 ntBASIC2.15□□□□□ -2.07
MSX2P35548 AP003484.1-201ENST00000530974 250 ntBASIC2.15□□□□□ -2.07
MSX2P35548 MIR6766-201ENST00000622641 72 ntBASIC2.15□□□□□ -2.07
MSX2P35548 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.15□□□□□ -2.07
MSX2P35548 Y_RNA.85-201ENST00000363014 111 ntBASIC2.14□□□□□ -2.07
MSX2P35548 Y_RNA.198-201ENST00000364013 98 ntBASIC2.14□□□□□ -2.07
MSX2P35548 SNORA63D-201ENST00000364359 132 ntBASIC2.14□□□□□ -2.07
MSX2P35548 SNORD12C-201ENST00000386307 89 ntBASIC2.14□□□□□ -2.07
MSX2P35548 RNU6-554P-201ENST00000410466 106 ntBASIC2.14□□□□□ -2.07
MSX2P35548 RNA5SP338-201ENST00000410495 85 ntBASIC2.14□□□□□ -2.07
MSX2P35548 AL031737.1-201ENST00000450125 223 ntBASIC2.14□□□□□ -2.07
MSX2P35548 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
MSX2P35548 SNORA28-201ENST00000606769 126 ntBASIC2.14□□□□□ -2.07
MSX2P35548 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.14□□□□□ -2.07
MSX2P35548 AL035470.1-201ENST00000622571 220 ntBASIC2.14□□□□□ -2.07
MSX2P35548 AC027279.3-201ENST00000625055 122 ntBASIC2.14□□□□□ -2.07
MSX2P35548 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.14□□□□□ -2.07
MSX2P35548 ZNF658B-202ENST00000615961 3375 ntBASIC2.13□□□□□ -2.07
MSX2P35548 RNU6-1255P-201ENST00000363434 112 ntBASIC2.13□□□□□ -2.07
MSX2P35548 RNU6-1107P-201ENST00000364817 104 ntBASIC2.13□□□□□ -2.07
MSX2P35548 RNY1P6-201ENST00000384193 109 ntBASIC2.13□□□□□ -2.07
MSX2P35548 RNU6-163P-201ENST00000384396 106 ntBASIC2.13□□□□□ -2.07
MSX2P35548 MT-TI-201ENST00000387365 69 ntBASIC2.13□□□□□ -2.07
MSX2P35548 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
MSX2P35548 AC008413.1-201ENST00000511864 177 ntBASIC2.13□□□□□ -2.07
MSX2P35548 RNU6-830P-201ENST00000516353 107 ntBASIC2.13□□□□□ -2.07
MSX2P35548 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
MSX2P35548 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
MSX2P35548 RNU1-133P-201ENST00000364867 167 ntBASIC2.12□□□□□ -2.07
MSX2P35548 SNORA4.2-201ENST00000365313 147 ntBASIC2.12□□□□□ -2.07
MSX2P35548 SNORD38C-201ENST00000384381 69 ntBASIC2.12□□□□□ -2.07
MSX2P35548 Y_RNA.495-201ENST00000384435 112 ntBASIC2.12□□□□□ -2.07
MSX2P35548 U8.16-201ENST00000391279 133 ntBASIC2.12□□□□□ -2.07
MSX2P35548 AC069257.2-201ENST00000441819 155 ntBASIC2.12□□□□□ -2.07
MSX2P35548 RNU6-717P-201ENST00000459076 104 ntBASIC2.12□□□□□ -2.07
MSX2P35548 SNORA18.7-201ENST00000516910 131 ntBASIC2.12□□□□□ -2.07
MSX2P35548 MIR5002-201ENST00000584713 97 ntBASIC2.12□□□□□ -2.07
MSX2P35548 AC009831.4-201ENST00000620744 325 ntBASIC2.12□□□□□ -2.07
MSX2P35548 AC091932.4-201ENST00000623386 200 ntBASIC2.12□□□□□ -2.07
MSX2P35548 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
MSX2P35548 ICE2P2-201ENST00000483823 2787 ntBASIC2.11□□□□□ -2.07
MSX2P35548 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
MSX2P35548 RNA5SP432-201ENST00000362480 116 ntBASIC2.11□□□□□ -2.07
MSX2P35548 RNA5SP160-201ENST00000364866 120 ntBASIC2.11□□□□□ -2.07
MSX2P35548 Y_RNA.298-201ENST00000364960 107 ntBASIC2.11□□□□□ -2.07
MSX2P35548 Y_RNA.351-201ENST00000365436 96 ntBASIC2.11□□□□□ -2.07
MSX2P35548 RNU6-32P-201ENST00000383948 107 ntBASIC2.11□□□□□ -2.07
MSX2P35548 RNU6-13P-201ENST00000384248 107 ntBASIC2.11□□□□□ -2.07
MSX2P35548 RNU6-424P-201ENST00000384367 105 ntBASIC2.11□□□□□ -2.07
MSX2P35548 RNU6-12P-201ENST00000384604 107 ntBASIC2.11□□□□□ -2.07
MSX2P35548 RNU6-41P-201ENST00000384741 107 ntBASIC2.11□□□□□ -2.07
MSX2P35548 RN7SKP200-201ENST00000410564 320 ntBASIC2.11□□□□□ -2.07
MSX2P35548 AC090255.1-201ENST00000495779 349 ntBASIC2.11□□□□□ -2.07
MSX2P35548 RNVU1-2-201ENST00000516326 135 ntBASIC2.11□□□□□ -2.07
MSX2P35548 AC021443.1-201ENST00000604478 211 ntBASIC2.11□□□□□ -2.07
MSX2P35548 AC103810.6-201ENST00000606708 136 ntBASIC2.11□□□□□ -2.07
MSX2P35548 AC016717.2-201ENST00000609089 5141 ntBASIC2.11□□□□□ -2.07
MSX2P35548 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
MSX2P35548 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
MSX2P35548 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
MSX2P35548 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
MSX2P35548 AL627390.1-201ENST00000396055 340 ntBASIC2.1□□□□□ -2.07
MSX2P35548 RNU7-80P-201ENST00000459562 61 ntBASIC2.1□□□□□ -2.07
MSX2P35548 RNU7-123P-201ENST00000515911 60 ntBASIC2.1□□□□□ -2.07
MSX2P35548 SNORA31.4-201ENST00000516049 129 ntBASIC2.1□□□□□ -2.07
MSX2P35548 RNA5SP168-201ENST00000516642 112 ntBASIC2.1□□□□□ -2.07
MSX2P35548 RNU7-70P-201ENST00000516941 66 ntBASIC2.1□□□□□ -2.07
MSX2P35548 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.1□□□□□ -2.07
MSX2P35548 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.1□□□□□ -2.07
MSX2P35548 RNU6-833P-201ENST00000363486 107 ntBASIC2.09□□□□□ -2.07
MSX2P35548 RNA5SP68-201ENST00000363885 119 ntBASIC2.09□□□□□ -2.07
MSX2P35548 RNA5SP138-201ENST00000365098 114 ntBASIC2.09□□□□□ -2.07
MSX2P35548 Y_RNA.362-201ENST00000365518 110 ntBASIC2.09□□□□□ -2.07
MSX2P35548 Y_RNA.494-201ENST00000384432 111 ntBASIC2.09□□□□□ -2.07
MSX2P35548 SNORA48.1-201ENST00000390879 135 ntBASIC2.09□□□□□ -2.07
MSX2P35548 AL034345.1-201ENST00000407768 123 ntBASIC2.09□□□□□ -2.07
MSX2P35548 AC015922.2-201ENST00000435593 184 ntBASIC2.09□□□□□ -2.07
MSX2P35548 RPS27P21-201ENST00000486977 252 ntBASIC2.09□□□□□ -2.07
MSX2P35548 RNA5SP148-201ENST00000516527 94 ntBASIC2.09□□□□□ -2.07
MSX2P35548 SUMO2P16-201ENST00000519475 264 ntBASIC2.09□□□□□ -2.07
MSX2P35548 SUB1P4-201ENST00000566062 339 ntBASIC2.09□□□□□ -2.07
MSX2P35548 HSPE1P19-201ENST00000603327 295 ntBASIC2.09□□□□□ -2.07
MSX2P35548 RNU6-94P-201ENST00000607728 107 ntBASIC2.09□□□□□ -2.07
MSX2P35548 MIR6817-201ENST00000615588 66 ntBASIC2.09□□□□□ -2.07
MSX2P35548 AL596211.1-201ENST00000569873 2277 ntBASIC2.08□□□□□ -2.08
MSX2P35548 RNA5SP276-201ENST00000362580 94 ntBASIC2.08□□□□□ -2.08
MSX2P35548 Y_RNA.163-201ENST00000363702 113 ntBASIC2.08□□□□□ -2.08
MSX2P35548 Y_RNA.213-201ENST00000364178 111 ntBASIC2.08□□□□□ -2.08
MSX2P35548 Y_RNA.323-201ENST00000365157 109 ntBASIC2.08□□□□□ -2.08
MSX2P35548 Y_RNA.328-201ENST00000365208 113 ntBASIC2.08□□□□□ -2.08
MSX2P35548 Y_RNA.454-201ENST00000384224 113 ntBASIC2.08□□□□□ -2.08
MSX2P35548 SNORA27-201ENST00000384323 126 ntBASIC2.08□□□□□ -2.08
MSX2P35548 RNU6-1104P-201ENST00000384723 104 ntBASIC2.08□□□□□ -2.08
MSX2P35548 RNU6-1031P-201ENST00000384773 107 ntBASIC2.08□□□□□ -2.08
MSX2P35548 U8.17-201ENST00000391292 132 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms