Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 Y_RNA.420-201ENST00000384043 110 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 RNU6-959P-201ENST00000384671 107 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 MIR518F-201ENST00000384973 87 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
LMX1BO60663 SNORA79-201ENST00000408376 140 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 BTF3P4-201ENST00000418852 495 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 RPL30P13-201ENST00000418873 348 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 STAG3L5P-204ENST00000443759 179 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 AC023449.1-201ENST00000454464 154 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 SNORD45.4-201ENST00000516629 73 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 RNU6-365P-201ENST00000517113 106 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 RNU2-19P-201ENST00000517288 84 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 AL365205.2-201ENST00000594586 68 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 MIR376A2-201ENST00000636782 80 ntBASIC1.54□□□□□ -2.16
LMX1BO60663 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
LMX1BO60663 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
LMX1BO60663 Y_RNA.265-201ENST00000364677 108 ntBASIC1.53□□□□□ -2.16
LMX1BO60663 SNORD24-201ENST00000383884 75 ntBASIC1.53□□□□□ -2.16
LMX1BO60663 RNU6-1031P-201ENST00000384773 107 ntBASIC1.53□□□□□ -2.16
LMX1BO60663 SNORD37.2-201ENST00000391075 66 ntBASIC1.53□□□□□ -2.16
LMX1BO60663 U8.16-201ENST00000391279 133 ntBASIC1.53□□□□□ -2.16
LMX1BO60663 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.53□□□□□ -2.16
LMX1BO60663 CALM2P4-201ENST00000430810 426 ntBASIC1.53□□□□□ -2.16
LMX1BO60663 AC024614.2-201ENST00000577584 372 ntBASIC1.53□□□□□ -2.16
LMX1BO60663 MIR4529-201ENST00000578110 78 ntBASIC1.53□□□□□ -2.16
LMX1BO60663 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.53□□□□□ -2.16
LMX1BO60663 AP001340.1-201ENST00000624405 217 ntBASIC1.53□□□□□ -2.16
LMX1BO60663 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.53□□□□□ -2.16
LMX1BO60663 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
LMX1BO60663 RNU6-199P-201ENST00000362954 107 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 RNY1P10-201ENST00000363268 113 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 SNORA25.7-201ENST00000364375 127 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 RNA5SP363-201ENST00000365072 115 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 RNU6-424P-201ENST00000384367 105 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 MIR520A-201ENST00000384862 85 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 MIR676-201ENST00000390702 67 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 AL627390.1-201ENST00000396055 340 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 MIR513C-201ENST00000401352 84 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 MIR548I2-201ENST00000408348 149 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 RNU6-321P-201ENST00000410912 106 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 AC069257.2-201ENST00000441819 155 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 AC114811.1-201ENST00000507207 168 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 RNU6-504P-201ENST00000516568 104 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 RNU6-126P-201ENST00000516685 103 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.52□□□□□ -2.17
LMX1BO60663 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1BO60663 RNU6-508P-201ENST00000363231 103 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 Y_RNA.218-201ENST00000364218 104 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 MIR624-201ENST00000385217 97 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 SNORA40-201ENST00000388090 126 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
LMX1BO60663 SNORA67.5-201ENST00000391036 107 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 SNORD77.3-201ENST00000391113 65 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 SNORA26-201ENST00000391286 122 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 RNU6-938P-201ENST00000411285 103 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.51□□□□□ -2.17
LMX1BO60663 AF228730.3-201ENST00000436691 102 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.51□□□□□ -2.17
LMX1BO60663 Y_RNA.686-201ENST00000516548 134 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 RNA5SP168-201ENST00000516642 112 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 SNORA31.17-201ENST00000516953 127 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 RNU6-250P-201ENST00000516958 103 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 RNU6-1270P-201ENST00000517128 108 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 AC012493.3-201ENST00000604494 112 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 MIR502-201ENST00000606349 86 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 MIR8081-201ENST00000611533 95 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 AC021506.2-201ENST00000612354 169 ntBASIC1.51□□□□□ -2.17
LMX1BO60663 WWP1P1-201ENST00000466609 2769 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 RNU6-1292P-201ENST00000383856 107 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 Y_RNA.547-201ENST00000384654 119 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 MIR891A-201ENST00000401237 79 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 RN7SKP200-201ENST00000410564 320 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 SNRPGP13-201ENST00000442212 177 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 TRMT112P2-201ENST00000512910 132 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 RNU6-693P-201ENST00000516134 107 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 RNU7-25P-201ENST00000516544 62 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 RNU6-971P-201ENST00000516920 106 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 Y_RNA.714-201ENST00000517065 90 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 AC090142.3-201ENST00000519012 385 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 MIR3129-201ENST00000581095 76 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 U1.36-201ENST00000620684 176 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 AC027279.3-201ENST00000625055 122 ntBASIC1.5□□□□□ -2.17
LMX1BO60663 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.5□□□□□ -2.17
LMX1BO60663 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.49□□□□□ -2.17
LMX1BO60663 RNU6-1084P-201ENST00000362498 107 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 Y_RNA.52-201ENST00000362760 96 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 U8.1-201ENST00000362843 134 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 SNORD14E-201ENST00000364009 85 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 Y_RNA.280-201ENST00000364765 112 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 snoU2-30.1-201ENST00000365012 70 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 Y_RNA.336-201ENST00000365307 109 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 RNU4-62P-201ENST00000410125 130 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 RNA5SP236-201ENST00000516169 116 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 SCARNA15-202ENST00000516881 127 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 MIR3618-201ENST00000580330 88 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 AC131055.1-201ENST00000584626 316 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 AL359821.1-201ENST00000605519 182 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 SNORA28-201ENST00000606769 126 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 AL365222.1-201ENST00000614661 98 ntBASIC1.49□□□□□ -2.17
LMX1BO60663 MIR7111-201ENST00000619751 72 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms