Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 MIR3668-201ENST00000582138 75 ntBASIC1.71□□□□□ -2.14
HIPK3Q9H422 AL391903.3-201ENST00000612158 163 ntBASIC1.71□□□□□ -2.14
HIPK3Q9H422 Y_RNA.29-201ENST00000362570 113 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 RNU6-203P-201ENST00000384038 104 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 RNU6-424P-201ENST00000384367 105 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 Y_RNA.571-201ENST00000384753 98 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 U8.16-201ENST00000391279 133 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 RPL30P13-201ENST00000418873 348 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 AC023449.1-201ENST00000454464 154 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 AL049861.1-201ENST00000603130 150 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 RNU2-4P-201ENST00000606190 192 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 uc_338.4-201ENST00000616635 176 ntBASIC1.7□□□□□ -2.14
HIPK3Q9H422 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.7□□□□□ -2.14
HIPK3Q9H422 Y_RNA.121-201ENST00000363309 113 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 RNU6-103P-201ENST00000363686 107 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 RNU6-414P-201ENST00000363705 104 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 Y_RNA.191-201ENST00000363972 113 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 SNORD50B-201ENST00000364995 70 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 Y_RNA.435-201ENST00000384095 112 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 MIR194-1-201ENST00000384892 85 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 RNU6-907P-201ENST00000390924 102 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 Y_RNA.587-201ENST00000391210 103 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 AL606845.1-201ENST00000404881 255 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 JTBP1-201ENST00000441314 247 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 RNU1-123P-201ENST00000458950 160 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.69□□□□□ -2.14
HIPK3Q9H422 RNU6-1007P-201ENST00000516586 107 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 RNU6-1116P-201ENST00000517269 99 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 AP002392.1-201ENST00000537692 208 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 AC087685.1-201ENST00000587507 141 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 AL513423.1-201ENST00000621695 132 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 AC095038.3-201ENST00000634439 195 ntBASIC1.69□□□□□ -2.14
HIPK3Q9H422 RNY3P5-201ENST00000384127 102 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 RNU4-70P-201ENST00000384579 139 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 RNU6-1228P-201ENST00000391014 107 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 PIGPP3-201ENST00000425307 415 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 PGBD4P5-201ENST00000445958 426 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 CYCTP-201ENST00000504253 315 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 AC008834.1-201ENST00000511612 175 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 RNA5SP102-201ENST00000516865 106 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 AC022559.1-201ENST00000520905 205 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.68□□□□□ -2.14
HIPK3Q9H422 MIR4744-201ENST00000581563 82 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 AC120024.3-201ENST00000603167 156 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 AC004792.1-201ENST00000614523 137 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 AC027279.3-201ENST00000625055 122 ntBASIC1.68□□□□□ -2.14
HIPK3Q9H422 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HIPK3Q9H422 MIR424-201ENST00000362227 98 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 RNU6-1084P-201ENST00000362498 107 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 Y_RNA.233-201ENST00000364407 101 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 snoU2-30.1-201ENST00000365012 70 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 RNA5SP363-201ENST00000365072 115 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 RNU6-163P-201ENST00000384396 106 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
HIPK3Q9H422 RNU2-64P-201ENST00000411315 191 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 AL161935.2-201ENST00000414627 60 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 AC114811.1-201ENST00000507207 168 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 SNORD77.4-201ENST00000516158 81 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 SNORD45.4-201ENST00000516629 73 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 RNU6-182P-201ENST00000516970 105 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 SNORA44.1-201ENST00000517031 108 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.67□□□□□ -2.14
HIPK3Q9H422 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.67□□□□□ -2.14
HIPK3Q9H422 MIR4452-201ENST00000583004 71 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 AC008507.4-201ENST00000585464 127 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 AC072026.1-201ENST00000605023 201 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 MIR8074-201ENST00000615081 81 ntBASIC1.67□□□□□ -2.14
HIPK3Q9H422 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
HIPK3Q9H422 MIR660-201ENST00000385235 97 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 RNU6-578P-201ENST00000390980 103 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 SNORD72-201ENST00000390994 80 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 MIR934-201ENST00000401241 83 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 RNU7-120P-201ENST00000459334 63 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 Y_RNA.797-201ENST00000515977 94 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 RNU7-12P-201ENST00000516030 62 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 RNU7-149P-201ENST00000516739 59 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.66□□□□□ -2.14
HIPK3Q9H422 SNORA77B-201ENST00000578179 125 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 MIR4285-201ENST00000581001 85 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 AC108706.1-201ENST00000611053 297 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 AL353770.2-201ENST00000620024 78 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 SNORD3E-202ENST00000627253 216 ntBASIC1.66□□□□□ -2.14
HIPK3Q9H422 RNU6-1123P-201ENST00000362347 106 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 RNU6-833P-201ENST00000363486 107 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 Y_RNA.182-201ENST00000363880 111 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 RNU6-1138P-201ENST00000365359 106 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 MIR1267-201ENST00000408723 78 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.65□□□□□ -2.15
HIPK3Q9H422 SNRPGP8-201ENST00000454064 226 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.65□□□□□ -2.15
HIPK3Q9H422 RNU6-561P-201ENST00000516222 102 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 MIR3198-2-201ENST00000577868 80 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 Pinc.1-201ENST00000616452 154 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 AC091895.1-201ENST00000624494 256 ntBASIC1.65□□□□□ -2.15
HIPK3Q9H422 MIR30A-201ENST00000385092 71 ntBASIC1.64□□□□□ -2.15
HIPK3Q9H422 MIR891A-201ENST00000401237 79 ntBASIC1.64□□□□□ -2.15
HIPK3Q9H422 Y_RNA.622-201ENST00000411091 108 ntBASIC1.64□□□□□ -2.15
HIPK3Q9H422 RNU2-55P-201ENST00000411146 174 ntBASIC1.64□□□□□ -2.15
HIPK3Q9H422 AL354695.1-201ENST00000427935 228 ntBASIC1.64□□□□□ -2.15
HIPK3Q9H422 AC093850.1-201ENST00000454121 251 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms