Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MIR520E-201ENST00000384867 87 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 U8.16-201ENST00000391279 133 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 MIR1298-201ENST00000408783 112 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 RPS29P23-201ENST00000458635 123 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 RNU7-34P-201ENST00000459394 64 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 RNU6-453P-201ENST00000516819 85 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 AC068338.1-201ENST00000565567 176 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 RPL23AP91-201ENST00000569211 455 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 MIR4709-201ENST00000577272 72 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 MIR4762-201ENST00000585261 75 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 AC090425.1-201ENST00000610007 140 ntBASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 SNORD114-27-201ENST00000363766 70 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.229-201ENST00000364347 113 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 U8.5-201ENST00000364528 136 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.257-201ENST00000364596 102 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.265-201ENST00000364677 108 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 RNU6-47P-201ENST00000383866 107 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 MIR562-201ENST00000384894 95 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 RNU11-5P-201ENST00000391216 129 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 RNU6-381P-201ENST00000391259 108 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 RN7SKP200-201ENST00000410564 320 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 SNRPGP10-201ENST00000432323 225 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 RNA5SP168-201ENST00000516642 112 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.802-201ENST00000614892 130 ntBASIC1.35□□□□□ -2.19
UPF3AQ9H1J1 MIR411-201ENST00000362239 96 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 SNORD68-201ENST00000363214 84 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.199-201ENST00000364014 102 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.200-201ENST00000364018 102 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 RNU6-923P-201ENST00000364753 107 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.308-201ENST00000365043 101 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 RNU6-1318P-201ENST00000365389 103 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 SNORA8.3-201ENST00000384679 139 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 MT-TT-201ENST00000387460 66 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 RNU6-918P-201ENST00000391219 106 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 RNA5SP482-201ENST00000391269 118 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 RNU6-493P-201ENST00000391321 108 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 HSPE1P24-201ENST00000450782 238 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 AC005908.1-201ENST00000468701 347 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 RNU6-138P-201ENST00000515952 107 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 MIR4724-201ENST00000579485 89 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 MIR6734-201ENST00000621166 68 ntBASIC1.34□□□□□ -2.19
UPF3AQ9H1J1 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 MIR367-201ENST00000362299 68 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.262-201ENST00000364641 102 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 SNORD50B-201ENST00000364995 70 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.354-201ENST00000365448 111 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.552-201ENST00000384665 112 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 MIR222-201ENST00000384992 110 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 SNORD72-201ENST00000390994 80 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 AL034345.1-201ENST00000407768 123 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 COX6CP10-201ENST00000416832 224 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 FTH1P12-201ENST00000432137 551 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 JTBP1-201ENST00000441314 247 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 AC245047.8-201ENST00000456455 284 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 RNU7-28P-201ENST00000516759 62 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 FAM106DP-201ENST00000586416 501 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 AL442644.1-201ENST00000454390 3105 ntBASIC1.33□□□□□ -2.2
UPF3AQ9H1J1 MIR302D-201ENST00000362275 68 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.83-201ENST00000363005 113 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 RNU6-200P-201ENST00000364743 107 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 RNU6-950P-201ENST00000384651 107 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 MIR150-201ENST00000385048 84 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 MLLT10P1-201ENST00000418346 262 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 PIGPP3-201ENST00000425307 415 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 PGBD4P5-201ENST00000445958 426 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 AC093850.1-201ENST00000454121 251 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 RPS29P1-201ENST00000465274 159 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 RNU6-561P-201ENST00000516222 102 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 AC022559.1-201ENST00000520905 205 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 AL049861.1-201ENST00000603130 150 ntBASIC1.32□□□□□ -2.2
UPF3AQ9H1J1 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 MIR26B-201ENST00000362251 77 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.297-201ENST00000364950 91 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 RNU4-17P-201ENST00000365598 141 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 MIR660-201ENST00000385235 97 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 SNRPGP14-201ENST00000435400 219 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 AC114811.1-201ENST00000507207 168 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 RNU6-794P-201ENST00000517261 64 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 MIR4778-201ENST00000577635 80 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 AC015688.6-201ENST00000577737 104 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 MIR5688-201ENST00000580619 83 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 AC008507.4-201ENST00000585464 127 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 SNORA28-201ENST00000606769 126 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 AL513423.1-201ENST00000621695 132 ntBASIC1.31□□□□□ -2.2
UPF3AQ9H1J1 MIR616-201ENST00000385293 97 ntBASIC1.3□□□□□ -2.2
UPF3AQ9H1J1 RNA5SP496-201ENST00000391240 109 ntBASIC1.3□□□□□ -2.2
UPF3AQ9H1J1 RPL30P13-201ENST00000418873 348 ntBASIC1.3□□□□□ -2.2
UPF3AQ9H1J1 AC108059.2-201ENST00000434626 151 ntBASIC1.3□□□□□ -2.2
UPF3AQ9H1J1 AC015922.2-201ENST00000435593 184 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 314.7 ms