Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNU6-763P-201ENST00000390865 106 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 RNU6-1186P-201ENST00000410429 97 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 RNU2-61P-201ENST00000411069 191 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.82□□□□□ -2.28
CDX2Q99626 MTND4LP30-201ENST00000454092 297 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 AC091959.1-201ENST00000495857 238 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.82□□□□□ -2.28
CDX2Q99626 RNU6-111P-201ENST00000517179 105 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.82□□□□□ -2.28
CDX2Q99626 AC011921.3-201ENST00000605540 361 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 AL022345.2-201ENST00000606307 135 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 AL008718.3-201ENST00000610217 321 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 AL138825.1-201ENST00000618587 192 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 AC012676.2-201ENST00000619258 186 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.82□□□□□ -2.28
CDX2Q99626 snoU18.1-201ENST00000629629 71 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.82□□□□□ -2.28
CDX2Q99626 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CDX2Q99626 Y_RNA.14-201ENST00000362415 103 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 Y_RNA.310-201ENST00000365063 113 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 RNU6-290P-201ENST00000365212 101 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 Y_RNA.452-201ENST00000384202 108 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 SNORA25-201ENST00000384384 134 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 SNORD41-201ENST00000386967 70 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
CDX2Q99626 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.81□□□□□ -2.28
CDX2Q99626 AC005042.3-201ENST00000453230 174 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 RNU7-94P-201ENST00000459576 63 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 RPS27P22-201ENST00000478056 241 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 UBL5P1-201ENST00000507979 193 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 AC097462.1-201ENST00000514125 324 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 RNA5SP20-201ENST00000515976 84 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 AC004812.1-201ENST00000540773 146 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 MIR4438-201ENST00000585271 93 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 AC004832.4-201ENST00000608952 331 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 AC073349.3-201ENST00000617616 186 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 U4.1-201ENST00000620349 87 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 MIR8065-201ENST00000620577 100 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 AC078938.1-201ENST00000620993 318 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 AC068647.2-201ENST00000637380 353 ntBASIC0.81□□□□□ -2.28
CDX2Q99626 Y_RNA.54-201ENST00000362766 105 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-379P-201ENST00000363813 104 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 Y_RNA.217-201ENST00000364214 105 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 Y_RNA.230-201ENST00000364348 109 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-1187P-201ENST00000364771 110 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 Y_RNA.518-201ENST00000384552 113 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 Y_RNA.526-201ENST00000384572 110 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 Y_RNA.562-201ENST00000384695 113 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-21P-201ENST00000384710 107 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 MIR19B1-201ENST00000384829 87 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 MIR1302-3-201ENST00000408128 138 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 MIR1302-6-201ENST00000408466 90 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-383P-201ENST00000410864 94 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU5A-5P-201ENST00000411054 116 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-1054P-201ENST00000411293 104 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.8□□□□□ -2.28
CDX2Q99626 RPS20P10-201ENST00000451209 253 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 Y_RNA.641-201ENST00000459414 105 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 AC091021.1-201ENST00000468051 388 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 AC117454.1-201ENST00000491120 168 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 SEPT14P8-201ENST00000508026 178 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 AC010598.1-201ENST00000510378 103 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 SERF1AP1-201ENST00000514575 187 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-1143P-201ENST00000516125 104 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-1291P-201ENST00000516591 104 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-388P-201ENST00000517012 105 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-389P-201ENST00000517048 105 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 RNU6-1116P-201ENST00000517269 99 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 AC091178.2-201ENST00000584401 117 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 AL162424.1-201ENST00000602325 221 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 AL513534.2-201ENST00000603836 250 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 SNORD113-5-201ENST00000607261 78 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 AC062037.2-201ENST00000610137 73 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.8□□□□□ -2.28
CDX2Q99626 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
CDX2Q99626 RNU4-90P-201ENST00000362773 141 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 RNU6-1266P-201ENST00000362794 105 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 Y_RNA.65-201ENST00000362846 100 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 Y_RNA.136-201ENST00000363444 102 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 RNU6-702P-201ENST00000364982 107 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 RNU6-424P-201ENST00000384367 105 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 RNU6-1289P-201ENST00000384431 106 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 RNU6-713P-201ENST00000384761 107 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 MTCO2P33-201ENST00000402100 465 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 AL034345.1-201ENST00000407768 123 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 RNU6-855P-201ENST00000410395 104 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 SNRPGP10-201ENST00000432323 225 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 POLR2KP2-201ENST00000438155 177 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 AC104332.1-201ENST00000440471 797 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.79□□□□□ -2.28
CDX2Q99626 RNU7-141P-201ENST00000459304 62 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 RPL39P28-201ENST00000465655 155 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 OR9P1P-201ENST00000496431 281 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 RNU2-31P-201ENST00000516954 155 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 AC090425.1-201ENST00000610007 140 ntBASIC0.79□□□□□ -2.28
CDX2Q99626 Y_RNA.152-201ENST00000363578 100 ntBASIC0.78□□□□□ -2.28
CDX2Q99626 Y_RNA.288-201ENST00000364854 92 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 167.3 ms