Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 7SK.10-201ENST00000621414 298 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.44-201ENST00000362676 108 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.82-201ENST00000363000 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.92-201ENST00000363043 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.235-201ENST00000364412 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 U8.5-201ENST00000364528 136 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.306-201ENST00000365015 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.312-201ENST00000365089 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.322-201ENST00000365151 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-424P-201ENST00000384367 105 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-1289P-201ENST00000384431 106 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 U8.16-201ENST00000391279 133 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 BTF3P11-201ENST00000426582 477 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 AC245047.7-201ENST00000440265 293 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 STAG3L5P-204ENST00000443759 179 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.650-201ENST00000459002 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-1132P-201ENST00000459214 107 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 NDUFA4P2-201ENST00000489989 244 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.777-201ENST00000516982 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-1116P-201ENST00000517269 99 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 AC090049.2-201ENST00000550377 109 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 MIR3149-201ENST00000584629 83 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 MIR4762-201ENST00000585261 75 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 POLR3GP1-201ENST00000594073 261 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.771-201ENST00000598668 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 AC211469.2-201ENST00000605461 205 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 AL020996.3-201ENST00000606617 222 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 AL021707.8-201ENST00000609428 183 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 AC013791.1-201ENST00000616619 62 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.789-201ENST00000622480 102 ntBASIC0.96□□□□□ -2.26
ZNF540Q8NDQ6 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.307-201ENST00000365022 117 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 SNORD114-22-201ENST00000365423 72 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-211P-201ENST00000384047 107 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-196P-201ENST00000384315 107 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.572-201ENST00000384757 98 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 MIR522-201ENST00000385071 87 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 MIR653-201ENST00000385279 96 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 SNORA53-201ENST00000391141 249 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 MTCO2P33-201ENST00000402100 465 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 SNORA36B-201ENST00000410438 131 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 SNRPGP10-201ENST00000432323 225 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 SNORA4-201ENST00000584302 138 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 U4.1-201ENST00000620349 87 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 MIR6734-201ENST00000621166 68 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 AC106754.2-201ENST00000623006 233 ntBASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.95□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.60-201ENST00000362831 98 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-674P-201ENST00000363831 107 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 RNU4-10P-201ENST00000364383 140 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.288-201ENST00000364854 92 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.352-201ENST00000365439 102 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 SNORA80D-201ENST00000384488 135 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 AC233266.1-201ENST00000454518 96 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 SNORD11-201ENST00000459124 84 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 AC048334.1-201ENST00000477975 159 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 PDCD5P2-201ENST00000507570 312 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 RNA5SP168-201ENST00000516642 112 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 AC100767.1-201ENST00000528178 123 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 MIR3128-201ENST00000581957 66 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 AC062037.2-201ENST00000610137 73 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 AC242852.1-201ENST00000612151 96 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 AC244015.1-201ENST00000622301 99 ntBASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.20-201ENST00000362479 113 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-1209P-201ENST00000363655 107 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-899P-201ENST00000363947 107 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.203-201ENST00000364106 102 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.277-201ENST00000364754 102 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-702P-201ENST00000364982 107 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.416-201ENST00000384014 113 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.447-201ENST00000384184 113 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.477-201ENST00000384352 108 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.556-201ENST00000384677 113 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 MIR526A1-201ENST00000384897 85 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-383P-201ENST00000410864 94 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 SNRPGP14-201ENST00000435400 219 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 MTND4LP30-201ENST00000454092 297 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-437P-201ENST00000459408 95 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 SNORD79.1-201ENST00000516069 84 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-113P-201ENST00000516653 101 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 RNU7-28P-201ENST00000516759 62 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 RNU2-56P-201ENST00000516826 190 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 RNU7-116P-201ENST00000516940 62 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 MIR5692C2-201ENST00000577959 77 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 AL512605.2-201ENST00000592972 256 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 SNORD114-21-201ENST00000606412 72 ntBASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
ZNF540Q8NDQ6 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms