Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RNU6-1309P-201ENST00000363305 108 ntBASIC-1.16□□□□□ -2.6
HTTP42858 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.16□□□□□ -2.6
HTTP42858 SNORD115-8-201ENST00000363856 82 ntBASIC-1.16□□□□□ -2.6
HTTP42858 SNORD115-38-201ENST00000365037 82 ntBASIC-1.16□□□□□ -2.6
HTTP42858 SNORA20B-201ENST00000384220 132 ntBASIC-1.16□□□□□ -2.6
HTTP42858 SNORD77.3-201ENST00000391113 65 ntBASIC-1.16□□□□□ -2.6
HTTP42858 AC096949.1-201ENST00000412047 152 ntBASIC-1.16□□□□□ -2.6
HTTP42858 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.16□□□□□ -2.6
HTTP42858 AC018714.1-201ENST00000605028 208 ntBASIC-1.16□□□□□ -2.6
HTTP42858 MIR548AE1-201ENST00000583292 70 ntBASIC-1.17□□□□□ -2.6
HTTP42858 AC016252.1-201ENST00000609721 474 ntBASIC-1.17□□□□□ -2.6
HTTP42858 PART1_1.1-201ENST00000611761 217 ntBASIC-1.17□□□□□ -2.6
HTTP42858 MIR1322-201ENST00000638013 71 ntBASIC-1.17□□□□□ -2.6
HTTP42858 SNORA27.1-201ENST00000362604 124 ntBASIC-1.17□□□□□ -2.6
HTTP42858 RNU6-61P-201ENST00000365528 109 ntBASIC-1.17□□□□□ -2.6
HTTP42858 RNU4-20P-201ENST00000365601 151 ntBASIC-1.17□□□□□ -2.6
HTTP42858 RNU6-476P-201ENST00000384726 107 ntBASIC-1.17□□□□□ -2.6
HTTP42858 MTCO1P27-201ENST00000448269 226 ntBASIC-1.17□□□□□ -2.6
HTTP42858 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-1.17□□□□□ -2.6
HTTP42858 AC009159.2-201ENST00000617603 606 ntBASIC-1.17□□□□□ -2.6
HTTP42858 Y_RNA.229-201ENST00000364347 113 ntBASIC-1.18□□□□□ -2.6
HTTP42858 RNU6-442P-201ENST00000383968 104 ntBASIC-1.18□□□□□ -2.6
HTTP42858 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC-1.18□□□□□ -2.6
HTTP42858 RNU6-830P-201ENST00000516353 107 ntBASIC-1.18□□□□□ -2.6
HTTP42858 AC022441.3-201ENST00000605737 136 ntBASIC-1.18□□□□□ -2.6
HTTP42858 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC-1.18□□□□□ -2.6
HTTP42858 AC008873.1-201ENST00000625051 138 ntBASIC-1.18□□□□□ -2.6
HTTP42858 snoU2_19.2-201ENST00000363024 80 ntBASIC-1.18□□□□□ -2.6
HTTP42858 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.18□□□□□ -2.6
HTTP42858 RNU6-83P-201ENST00000384568 112 ntBASIC-1.18□□□□□ -2.6
HTTP42858 AC097635.1-201ENST00000450678 155 ntBASIC-1.18□□□□□ -2.6
HTTP42858 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.18□□□□□ -2.6
HTTP42858 RNU6-704P-201ENST00000364162 103 ntBASIC-1.18□□□□□ -2.6
HTTP42858 Y_RNA.598-201ENST00000410480 95 ntBASIC-1.18□□□□□ -2.6
HTTP42858 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-1.18□□□□□ -2.6
HTTP42858 JPX_2.1-201ENST00000614161 69 ntBASIC-1.18□□□□□ -2.6
HTTP42858 AC093423.1-201ENST00000440817 142 ntBASIC-1.19□□□□□ -2.6
HTTP42858 snoU13.6-201ENST00000458785 104 ntBASIC-1.19□□□□□ -2.6
HTTP42858 MIR3684-201ENST00000579779 74 ntBASIC-1.19□□□□□ -2.6
HTTP42858 Y_RNA.802-201ENST00000614892 130 ntBASIC-1.19□□□□□ -2.6
HTTP42858 U4.1-201ENST00000620349 87 ntBASIC-1.19□□□□□ -2.6
HTTP42858 RNU6-164P-201ENST00000364604 103 ntBASIC-1.19□□□□□ -2.6
HTTP42858 Y_RNA.407-201ENST00000383986 113 ntBASIC-1.19□□□□□ -2.6
HTTP42858 RPL22P17-201ENST00000438729 315 ntBASIC-1.19□□□□□ -2.6
HTTP42858 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC-1.19□□□□□ -2.6
HTTP42858 RNU6-329P-201ENST00000459618 107 ntBASIC-1.19□□□□□ -2.6
HTTP42858 RNU6-1198P-201ENST00000516904 67 ntBASIC-1.19□□□□□ -2.6
HTTP42858 RNU6-1122P-201ENST00000384449 107 ntBASIC-1.2□□□□□ -2.6
HTTP42858 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-1.2□□□□□ -2.6
HTTP42858 ELOCP17-201ENST00000414751 326 ntBASIC-1.2□□□□□ -2.6
HTTP42858 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC-1.2□□□□□ -2.6
HTTP42858 UBL5P4-201ENST00000562584 236 ntBASIC-1.2□□□□□ -2.6
HTTP42858 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC-1.2□□□□□ -2.6
HTTP42858 AL049861.1-201ENST00000603130 150 ntBASIC-1.2□□□□□ -2.6
HTTP42858 AL136370.1-201ENST00000608166 691 ntBASIC-1.2□□□□□ -2.6
HTTP42858 AC069503.3-201ENST00000618674 145 ntBASIC-1.2□□□□□ -2.6
HTTP42858 RNU6-865P-201ENST00000364772 107 ntBASIC-1.2□□□□□ -2.6
HTTP42858 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-1.2□□□□□ -2.6
HTTP42858 MIR4308-201ENST00000580634 81 ntBASIC-1.2□□□□□ -2.6
HTTP42858 RNU6-371P-201ENST00000364283 108 ntBASIC-1.2□□□□□ -2.6
HTTP42858 RNU6-746P-201ENST00000384112 109 ntBASIC-1.2□□□□□ -2.6
HTTP42858 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.2□□□□□ -2.6
HTTP42858 RNU6-325P-201ENST00000411132 105 ntBASIC-1.2□□□□□ -2.6
HTTP42858 RNU6-323P-201ENST00000521915 107 ntBASIC-1.2□□□□□ -2.6
HTTP42858 HIF1AP1-201ENST00000553642 175 ntBASIC-1.2□□□□□ -2.6
HTTP42858 AC127459.3-201ENST00000624328 466 ntBASIC-1.2□□□□□ -2.6
HTTP42858 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.21□□□□□ -2.6
HTTP42858 RNU6-336P-201ENST00000364891 107 ntBASIC-1.21□□□□□ -2.6
HTTP42858 MIR320B2-201ENST00000408479 138 ntBASIC-1.21□□□□□ -2.6
HTTP42858 RNU6-607P-201ENST00000411283 108 ntBASIC-1.21□□□□□ -2.6
HTTP42858 CEP57L1P1-201ENST00000430943 1201 ntBASIC-1.21□□□□□ -2.6
HTTP42858 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.21□□□□□ -2.6
HTTP42858 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-1.21□□□□□ -2.6
HTTP42858 RNU4-58P-201ENST00000363192 141 ntBASIC-1.21□□□□□ -2.6
HTTP42858 RNU6-727P-201ENST00000363592 107 ntBASIC-1.21□□□□□ -2.6
HTTP42858 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.21□□□□□ -2.6
HTTP42858 RNU4-75P-201ENST00000364621 146 ntBASIC-1.21□□□□□ -2.6
HTTP42858 Y_RNA.366-201ENST00000365540 102 ntBASIC-1.21□□□□□ -2.6
HTTP42858 Y_RNA.456-201ENST00000384232 111 ntBASIC-1.21□□□□□ -2.6
HTTP42858 ELOCP4-201ENST00000420090 333 ntBASIC-1.21□□□□□ -2.6
HTTP42858 UBE2D3P4-201ENST00000441973 436 ntBASIC-1.21□□□□□ -2.6
HTTP42858 AC010598.1-201ENST00000510378 103 ntBASIC-1.21□□□□□ -2.6
HTTP42858 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-1.21□□□□□ -2.6
HTTP42858 Y_RNA.22-201ENST00000362492 102 ntBASIC-1.22□□□□□ -2.6
HTTP42858 RNU6-571P-201ENST00000384128 107 ntBASIC-1.22□□□□□ -2.6
HTTP42858 MIR7-1-201ENST00000384871 110 ntBASIC-1.22□□□□□ -2.6
HTTP42858 SNORA26.4-201ENST00000391188 123 ntBASIC-1.22□□□□□ -2.6
HTTP42858 RNA5SP494-201ENST00000410653 129 ntBASIC-1.22□□□□□ -2.6
HTTP42858 RNU6-430P-201ENST00000517078 107 ntBASIC-1.22□□□□□ -2.6
HTTP42858 SNORD56.4-201ENST00000363883 71 ntBASIC-1.22□□□□□ -2.6
HTTP42858 RNU6-429P-201ENST00000384582 108 ntBASIC-1.22□□□□□ -2.6
HTTP42858 SNORD65.1-201ENST00000390889 71 ntBASIC-1.22□□□□□ -2.6
HTTP42858 Y_RNA.582-201ENST00000391023 95 ntBASIC-1.22□□□□□ -2.6
HTTP42858 RNU2-29P-201ENST00000410423 189 ntBASIC-1.22□□□□□ -2.6
HTTP42858 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC-1.22□□□□□ -2.6
HTTP42858 Y_RNA.714-201ENST00000517065 90 ntBASIC-1.22□□□□□ -2.6
HTTP42858 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC-1.22□□□□□ -2.6
HTTP42858 AL138960.2-201ENST00000625145 535 ntBASIC-1.22□□□□□ -2.6
HTTP42858 RNU5F-3P-201ENST00000363767 117 ntBASIC-1.22□□□□□ -2.61
HTTP42858 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.22□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms