Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SNORD11-201ENST00000459124 84 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 RNU6-1143P-201ENST00000516125 104 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 AP003733.2-201ENST00000529409 171 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 RPL23AP91-201ENST00000569211 455 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.91□□□□□ -2.26
PTPN4P29074 AC008507.4-201ENST00000585464 127 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.91□□□□□ -2.26
PTPN4P29074 AL391903.3-201ENST00000612158 163 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 SNORA25.1-201ENST00000362326 128 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 RNU6-1272P-201ENST00000362776 107 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 RNU1-36P-201ENST00000365130 165 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 SNORA53-201ENST00000391141 249 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 RNU2-64P-201ENST00000411315 191 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 MTND4LP30-201ENST00000454092 297 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 RNU7-90P-201ENST00000459216 62 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 AC091959.1-201ENST00000495857 238 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 SNORA18.7-201ENST00000516910 131 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 AL512605.2-201ENST00000592972 256 ntBASIC0.9□□□□□ -2.27
PTPN4P29074 AC068700.1-201ENST00000565862 3754 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 Y_RNA.16-201ENST00000362421 102 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 Y_RNA.84-201ENST00000363011 104 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 RNU6-1205P-201ENST00000363625 106 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 RNU6-144P-201ENST00000383951 107 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 RNU6-442P-201ENST00000383968 104 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 Y_RNA.466-201ENST00000384294 113 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 AC002429.1-201ENST00000437672 148 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 AL731563.1-201ENST00000442202 214 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 SNORD123-201ENST00000459473 70 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 RPL39P28-201ENST00000465655 155 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 RPS26P48-201ENST00000491713 339 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 RNU6-1007P-201ENST00000516586 107 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.89□□□□□ -2.27
PTPN4P29074 PRELID3BP2-201ENST00000605362 201 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 AC037487.3-201ENST00000606668 112 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 AC013791.1-201ENST00000616619 62 ntBASIC0.89□□□□□ -2.27
PTPN4P29074 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
PTPN4P29074 RNA5SP48-201ENST00000363969 126 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 Y_RNA.217-201ENST00000364214 105 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 RNU6-514P-201ENST00000384208 107 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 MIR520C-201ENST00000385005 87 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 MIR613-201ENST00000385248 95 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 SNORD72-201ENST00000390994 80 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 AL603910.2-201ENST00000407268 136 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 MTND5P22-201ENST00000458380 195 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 Y_RNA.641-201ENST00000459414 105 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 RNU7-41P-201ENST00000515917 61 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 RNU7-43P-201ENST00000516554 64 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.88□□□□□ -2.27
PTPN4P29074 MIR3973-201ENST00000579824 107 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 MIR4764-201ENST00000580680 88 ntBASIC0.88□□□□□ -2.27
PTPN4P29074 RNU6-268P-201ENST00000364174 107 ntBASIC0.87□□□□□ -2.27
PTPN4P29074 RNU6-662P-201ENST00000384253 104 ntBASIC0.87□□□□□ -2.27
PTPN4P29074 SNORD38C-201ENST00000384381 69 ntBASIC0.87□□□□□ -2.27
PTPN4P29074 MIR802-201ENST00000390235 94 ntBASIC0.87□□□□□ -2.27
PTPN4P29074 AC113618.1-201ENST00000416747 285 ntBASIC0.87□□□□□ -2.27
PTPN4P29074 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.87□□□□□ -2.27
PTPN4P29074 PDCD5P2-201ENST00000507570 312 ntBASIC0.87□□□□□ -2.27
PTPN4P29074 SNORA27.4-201ENST00000516650 95 ntBASIC0.87□□□□□ -2.27
PTPN4P29074 AP003716.2-201ENST00000528260 108 ntBASIC0.87□□□□□ -2.27
PTPN4P29074 MIR5692C2-201ENST00000577959 77 ntBASIC0.87□□□□□ -2.27
PTPN4P29074 SNORA75.2-201ENST00000391138 150 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 SNORA75.3-201ENST00000391231 150 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 RNU6-1203P-201ENST00000410703 110 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 BTF3P11-201ENST00000426582 477 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 FABP5P4-201ENST00000437203 171 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 RNU7-21P-201ENST00000459430 62 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 RNU6-1338P-201ENST00000516328 91 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 RNU6-830P-201ENST00000516353 107 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 AP003072.1-201ENST00000531740 145 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.86□□□□□ -2.27
PTPN4P29074 AL021707.8-201ENST00000609428 183 ntBASIC0.86□□□□□ -2.27
PTPN4P29074 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
PTPN4P29074 UBE2WP1-201ENST00000362030 340 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 RNA5SP264-201ENST00000363115 107 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 Y_RNA.540-201ENST00000384638 111 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 RNU6-1109P-201ENST00000391187 107 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 RNU6-383P-201ENST00000410864 94 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 SERF1AP1-201ENST00000514575 187 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.85□□□□□ -2.27
PTPN4P29074 CYP3A137P-201ENST00000562436 69 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 MIR5000-201ENST00000577717 103 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.85□□□□□ -2.27
PTPN4P29074 AC013244.2-201ENST00000603396 103 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 AL020996.3-201ENST00000606617 222 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 AL008718.3-201ENST00000610217 321 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 AC006441.5-201ENST00000612680 209 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 Pinc.1-201ENST00000616452 154 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 AC022140.2-201ENST00000623500 188 ntBASIC0.85□□□□□ -2.27
PTPN4P29074 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
PTPN4P29074 SNORA25.3-201ENST00000363205 127 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 Y_RNA.370-201ENST00000365589 108 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 Y_RNA.422-201ENST00000384054 114 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 MIR598-201ENST00000384868 97 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 MIR146A-201ENST00000385201 99 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 SNORD28B-201ENST00000390993 75 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 MIR942-201ENST00000401111 86 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.84□□□□□ -2.27
PTPN4P29074 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.84□□□□□ -2.27
PTPN4P29074 RN7SKP164-201ENST00000516138 266 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 181.4 ms