Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.41□□□□□ -2.02
RAPGEF3O95398 RNA5SP57-201ENST00000459463 123 ntBASIC2.41□□□□□ -2.02
RAPGEF3O95398 SNORA31.10-201ENST00000516482 106 ntBASIC2.41□□□□□ -2.02
RAPGEF3O95398 RNA5SP437-201ENST00000517249 129 ntBASIC2.41□□□□□ -2.02
RAPGEF3O95398 MIR4662B-201ENST00000579498 81 ntBASIC2.41□□□□□ -2.02
RAPGEF3O95398 AC091895.1-201ENST00000624494 256 ntBASIC2.41□□□□□ -2.02
RAPGEF3O95398 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.41□□□□□ -2.02
RAPGEF3O95398 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.4□□□□□ -2.02
RAPGEF3O95398 Y_RNA.441-201ENST00000384123 112 ntBASIC2.4□□□□□ -2.03
RAPGEF3O95398 Y_RNA.464-201ENST00000384282 110 ntBASIC2.4□□□□□ -2.03
RAPGEF3O95398 MIR522-201ENST00000385071 87 ntBASIC2.4□□□□□ -2.03
RAPGEF3O95398 RNU6-131P-201ENST00000391144 107 ntBASIC2.4□□□□□ -2.03
RAPGEF3O95398 RNU4-43P-201ENST00000410628 137 ntBASIC2.4□□□□□ -2.03
RAPGEF3O95398 OR9P1P-201ENST00000496431 281 ntBASIC2.4□□□□□ -2.03
RAPGEF3O95398 SNORD77.4-201ENST00000516158 81 ntBASIC2.4□□□□□ -2.03
RAPGEF3O95398 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.4□□□□□ -2.03
RAPGEF3O95398 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.4□□□□□ -2.03
RAPGEF3O95398 AL049861.1-201ENST00000603130 150 ntBASIC2.4□□□□□ -2.03
RAPGEF3O95398 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.4□□□□□ -2.03
RAPGEF3O95398 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
RAPGEF3O95398 RNA5SP276-201ENST00000362580 94 ntBASIC2.39□□□□□ -2.03
RAPGEF3O95398 SNORA16B-201ENST00000364674 135 ntBASIC2.39□□□□□ -2.03
RAPGEF3O95398 RNU6-1138P-201ENST00000365359 106 ntBASIC2.39□□□□□ -2.03
RAPGEF3O95398 RPL30P13-201ENST00000418873 348 ntBASIC2.39□□□□□ -2.03
RAPGEF3O95398 STAG3L5P-204ENST00000443759 179 ntBASIC2.39□□□□□ -2.03
RAPGEF3O95398 AL160236.1-201ENST00000556317 195 ntBASIC2.39□□□□□ -2.03
RAPGEF3O95398 MIR4431-201ENST00000579990 94 ntBASIC2.39□□□□□ -2.03
RAPGEF3O95398 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.39□□□□□ -2.03
RAPGEF3O95398 AL627230.6-201ENST00000611129 280 ntBASIC2.39□□□□□ -2.03
RAPGEF3O95398 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
RAPGEF3O95398 SNORD68-201ENST00000363214 84 ntBASIC2.38□□□□□ -2.03
RAPGEF3O95398 RN7SKP51-201ENST00000410781 304 ntBASIC2.38□□□□□ -2.03
RAPGEF3O95398 AL121914.1-201ENST00000450188 156 ntBASIC2.38□□□□□ -2.03
RAPGEF3O95398 snoU13.27-201ENST00000459278 104 ntBASIC2.38□□□□□ -2.03
RAPGEF3O95398 RNU1-92P-201ENST00000517017 135 ntBASIC2.38□□□□□ -2.03
RAPGEF3O95398 MIR4709-201ENST00000577272 72 ntBASIC2.38□□□□□ -2.03
RAPGEF3O95398 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.38□□□□□ -2.03
RAPGEF3O95398 AL353770.2-201ENST00000620024 78 ntBASIC2.38□□□□□ -2.03
RAPGEF3O95398 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
RAPGEF3O95398 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
RAPGEF3O95398 SNORA4.2-201ENST00000365313 147 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 Y_RNA.357-201ENST00000365487 109 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 Y_RNA.374-201ENST00000365606 101 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 RNU6-342P-201ENST00000384521 104 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 RNU6-1031P-201ENST00000384773 107 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 MIR15B-201ENST00000385045 98 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 RNU6-360P-201ENST00000390944 104 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 SNORA26-201ENST00000391286 122 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 SNORA79-201ENST00000408376 140 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 AL356379.1-201ENST00000414105 126 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 HSPE1P9-201ENST00000440046 311 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 NDUFA4P2-201ENST00000489989 244 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 RNU6-1299P-201ENST00000516316 100 ntBASIC2.37□□□□□ -2.03
RAPGEF3O95398 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.36□□□□□ -2.03
RAPGEF3O95398 RNU6-1135P-201ENST00000411083 103 ntBASIC2.36□□□□□ -2.03
RAPGEF3O95398 MLLT10P1-201ENST00000418346 262 ntBASIC2.36□□□□□ -2.03
RAPGEF3O95398 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.36□□□□□ -2.03
RAPGEF3O95398 SNRPGP8-201ENST00000454064 226 ntBASIC2.36□□□□□ -2.03
RAPGEF3O95398 MRPS17P9-201ENST00000511924 393 ntBASIC2.36□□□□□ -2.03
RAPGEF3O95398 RNA5SP153-201ENST00000516498 76 ntBASIC2.36□□□□□ -2.03
RAPGEF3O95398 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.36□□□□□ -2.03
RAPGEF3O95398 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.36□□□□□ -2.03
RAPGEF3O95398 AC008507.4-201ENST00000585464 127 ntBASIC2.36□□□□□ -2.03
RAPGEF3O95398 SNORD45.3-201ENST00000363836 72 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 RNU1-93P-201ENST00000364704 169 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 Y_RNA.432-201ENST00000384087 111 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 SNORA12.1-201ENST00000390873 148 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 AC074198.2-201ENST00000508153 258 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 RNU7-149P-201ENST00000516739 59 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 SNORA31.17-201ENST00000516953 127 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 RNU6-1212P-201ENST00000517023 104 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 AL773524.1-201ENST00000614065 229 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 AC027279.3-201ENST00000625055 122 ntBASIC2.35□□□□□ -2.03
RAPGEF3O95398 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
RAPGEF3O95398 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
RAPGEF3O95398 snoU2-30.1-201ENST00000365012 70 ntBASIC2.34□□□□□ -2.03
RAPGEF3O95398 RNU6-1062P-201ENST00000383908 107 ntBASIC2.34□□□□□ -2.03
RAPGEF3O95398 RNU4-52P-201ENST00000384209 138 ntBASIC2.34□□□□□ -2.03
RAPGEF3O95398 AC244636.1-201ENST00000421152 228 ntBASIC2.34□□□□□ -2.03
RAPGEF3O95398 HMGN2P38-201ENST00000423806 265 ntBASIC2.34□□□□□ -2.03
RAPGEF3O95398 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.34□□□□□ -2.03
RAPGEF3O95398 RNU7-34P-201ENST00000459394 64 ntBASIC2.34□□□□□ -2.03
RAPGEF3O95398 AC090255.1-201ENST00000495779 349 ntBASIC2.34□□□□□ -2.03
RAPGEF3O95398 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.34□□□□□ -2.03
RAPGEF3O95398 Pinc.1-201ENST00000616452 154 ntBASIC2.34□□□□□ -2.03
RAPGEF3O95398 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.34□□□□□ -2.03
RAPGEF3O95398 RNU6-484P-201ENST00000384016 107 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 RNU6-643P-201ENST00000384018 107 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 Y_RNA.622-201ENST00000411091 108 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 SEPT7P4-201ENST00000437076 306 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 HMGN2P32-201ENST00000444648 269 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 CYCTP-201ENST00000504253 315 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 AC107027.2-201ENST00000512197 115 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 RNU6-561P-201ENST00000516222 102 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 RNU6-197P-201ENST00000516680 100 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.33□□□□□ -2.04
RAPGEF3O95398 RNU6-1084P-201ENST00000362498 107 ntBASIC2.32□□□□□ -2.04
RAPGEF3O95398 RNU4-84P-201ENST00000364200 139 ntBASIC2.32□□□□□ -2.04
RAPGEF3O95398 SNORD48-201ENST00000364953 64 ntBASIC2.32□□□□□ -2.04
RAPGEF3O95398 Y_RNA.336-201ENST00000365307 109 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms