Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-988P-201ENST00000519081 107 ntBASIC0.79□□□□□ -2.28
SDC3O75056 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.79□□□□□ -2.28
SDC3O75056 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNU6-102P-201ENST00000384485 104 ntBASIC0.78□□□□□ -2.28
SDC3O75056 RNY1P4-201ENST00000384595 115 ntBASIC0.78□□□□□ -2.28
SDC3O75056 Y_RNA.569-201ENST00000384749 103 ntBASIC0.78□□□□□ -2.28
SDC3O75056 MIR216A-201ENST00000385063 110 ntBASIC0.78□□□□□ -2.28
SDC3O75056 MIR802-201ENST00000390235 94 ntBASIC0.78□□□□□ -2.28
SDC3O75056 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.78□□□□□ -2.28
SDC3O75056 AC004941.2-201ENST00000427009 228 ntBASIC0.78□□□□□ -2.28
SDC3O75056 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.78□□□□□ -2.28
SDC3O75056 RNU6-397P-201ENST00000516226 104 ntBASIC0.78□□□□□ -2.28
SDC3O75056 AC133485.1-201ENST00000567176 124 ntBASIC0.78□□□□□ -2.28
SDC3O75056 AC138907.6-201ENST00000568401 126 ntBASIC0.78□□□□□ -2.28
SDC3O75056 RPL23AP91-201ENST00000569211 455 ntBASIC0.78□□□□□ -2.28
SDC3O75056 MIR548AR-201ENST00000582191 57 ntBASIC0.78□□□□□ -2.28
SDC3O75056 AC013244.2-201ENST00000603396 103 ntBASIC0.78□□□□□ -2.28
SDC3O75056 AC006441.5-201ENST00000612680 209 ntBASIC0.78□□□□□ -2.28
SDC3O75056 Pinc.1-201ENST00000616452 154 ntBASIC0.78□□□□□ -2.28
SDC3O75056 AC008133.2-201ENST00000624540 351 ntBASIC0.78□□□□□ -2.28
SDC3O75056 AC134503.1-201ENST00000633048 54 ntBASIC0.78□□□□□ -2.28
SDC3O75056 AC134026.1-201ENST00000623249 2239 ntBASIC0.78□□□□□ -2.28
SDC3O75056 MTND4P29-201ENST00000503122 1372 ntBASIC0.78□□□□□ -2.28
SDC3O75056 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.77□□□□□ -2.29
SDC3O75056 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
SDC3O75056 SNORA25.3-201ENST00000363205 127 ntBASIC0.77□□□□□ -2.29
SDC3O75056 Y_RNA.205-201ENST00000364128 113 ntBASIC0.77□□□□□ -2.29
SDC3O75056 Y_RNA.276-201ENST00000364732 109 ntBASIC0.77□□□□□ -2.29
SDC3O75056 Y_RNA.330-201ENST00000365230 109 ntBASIC0.77□□□□□ -2.29
SDC3O75056 Y_RNA.370-201ENST00000365589 108 ntBASIC0.77□□□□□ -2.29
SDC3O75056 Y_RNA.389-201ENST00000383924 113 ntBASIC0.77□□□□□ -2.29
SDC3O75056 Y_RNA.535-201ENST00000384612 99 ntBASIC0.77□□□□□ -2.29
SDC3O75056 MIR608-201ENST00000384820 100 ntBASIC0.77□□□□□ -2.29
SDC3O75056 MIR508-201ENST00000384857 115 ntBASIC0.77□□□□□ -2.29
SDC3O75056 MIR146A-201ENST00000385201 99 ntBASIC0.77□□□□□ -2.29
SDC3O75056 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.77□□□□□ -2.29
SDC3O75056 MTCO1P5-201ENST00000433573 344 ntBASIC0.77□□□□□ -2.29
SDC3O75056 FABP5P4-201ENST00000437203 171 ntBASIC0.77□□□□□ -2.29
SDC3O75056 AL392103.1-201ENST00000447000 198 ntBASIC0.77□□□□□ -2.29
SDC3O75056 MTND4LP30-201ENST00000454092 297 ntBASIC0.77□□□□□ -2.29
SDC3O75056 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.77□□□□□ -2.29
SDC3O75056 SNORD114-2-201ENST00000363953 78 ntBASIC0.76□□□□□ -2.29
SDC3O75056 RNU6-450P-201ENST00000364654 107 ntBASIC0.76□□□□□ -2.29
SDC3O75056 RNU5E-4P-201ENST00000364931 120 ntBASIC0.76□□□□□ -2.29
SDC3O75056 RNU6-867P-201ENST00000364956 107 ntBASIC0.76□□□□□ -2.29
SDC3O75056 RNU6-763P-201ENST00000390865 106 ntBASIC0.76□□□□□ -2.29
SDC3O75056 MTCO2P33-201ENST00000402100 465 ntBASIC0.76□□□□□ -2.29
SDC3O75056 AL603910.2-201ENST00000407268 136 ntBASIC0.76□□□□□ -2.29
SDC3O75056 MIR1278-201ENST00000408753 81 ntBASIC0.76□□□□□ -2.29
SDC3O75056 Y_RNA.602-201ENST00000410535 92 ntBASIC0.76□□□□□ -2.29
SDC3O75056 RNA5SP255-201ENST00000516370 107 ntBASIC0.76□□□□□ -2.29
SDC3O75056 RN7SL793P-201ENST00000583259 296 ntBASIC0.76□□□□□ -2.29
SDC3O75056 AC131055.1-201ENST00000584626 316 ntBASIC0.76□□□□□ -2.29
SDC3O75056 MIR6835-201ENST00000621552 64 ntBASIC0.76□□□□□ -2.29
SDC3O75056 MIR4251-201ENST00000635819 61 ntBASIC0.76□□□□□ -2.29
SDC3O75056 Y_RNA.61-201ENST00000362835 102 ntBASIC0.75□□□□□ -2.29
SDC3O75056 RNU6-290P-201ENST00000365212 101 ntBASIC0.75□□□□□ -2.29
SDC3O75056 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
SDC3O75056 SNORD28B-201ENST00000390993 75 ntBASIC0.75□□□□□ -2.29
SDC3O75056 SNORD72-201ENST00000390994 80 ntBASIC0.75□□□□□ -2.29
SDC3O75056 U8.17-201ENST00000391292 132 ntBASIC0.75□□□□□ -2.29
SDC3O75056 MIR1302-7-201ENST00000408841 72 ntBASIC0.75□□□□□ -2.29
SDC3O75056 RNU6-121P-201ENST00000410525 99 ntBASIC0.75□□□□□ -2.29
SDC3O75056 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.75□□□□□ -2.29
SDC3O75056 Y_RNA.711-201ENST00000516993 102 ntBASIC0.75□□□□□ -2.29
SDC3O75056 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.75□□□□□ -2.29
SDC3O75056 Y_RNA.105-201ENST00000363182 111 ntBASIC0.74□□□□□ -2.29
SDC3O75056 Y_RNA.158-201ENST00000363651 101 ntBASIC0.74□□□□□ -2.29
SDC3O75056 SNORA22B-201ENST00000383876 138 ntBASIC0.74□□□□□ -2.29
SDC3O75056 Y_RNA.394-201ENST00000383942 103 ntBASIC0.74□□□□□ -2.29
SDC3O75056 RNU6-1067P-201ENST00000384752 107 ntBASIC0.74□□□□□ -2.29
SDC3O75056 Y_RNA.637-201ENST00000459424 114 ntBASIC0.74□□□□□ -2.29
SDC3O75056 MRPS35P2-201ENST00000508242 191 ntBASIC0.74□□□□□ -2.29
SDC3O75056 AC109810.1-201ENST00000534066 224 ntBASIC0.74□□□□□ -2.29
SDC3O75056 AL355297.3-201ENST00000604082 446 ntBASIC0.74□□□□□ -2.29
SDC3O75056 AL021707.8-201ENST00000609428 183 ntBASIC0.74□□□□□ -2.29
SDC3O75056 AC106800.4-201ENST00000614905 153 ntBASIC0.74□□□□□ -2.29
SDC3O75056 AC013791.1-201ENST00000616619 62 ntBASIC0.74□□□□□ -2.29
SDC3O75056 AC022140.2-201ENST00000623500 188 ntBASIC0.74□□□□□ -2.29
SDC3O75056 MIR6866-201ENST00000638146 69 ntBASIC0.74□□□□□ -2.29
SDC3O75056 RNU6-1205P-201ENST00000363625 106 ntBASIC0.73□□□□□ -2.29
SDC3O75056 RNU6-326P-201ENST00000365480 107 ntBASIC0.73□□□□□ -2.29
SDC3O75056 Y_RNA.537-201ENST00000384626 109 ntBASIC0.73□□□□□ -2.29
SDC3O75056 SNORA40.15-201ENST00000516884 107 ntBASIC0.73□□□□□ -2.29
SDC3O75056 RNU2-31P-201ENST00000516954 155 ntBASIC0.73□□□□□ -2.29
SDC3O75056 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
SDC3O75056 snoU2_19.2-201ENST00000363024 80 ntBASIC0.72□□□□□ -2.29
SDC3O75056 RNU6-770P-201ENST00000363929 105 ntBASIC0.72□□□□□ -2.29
SDC3O75056 Y_RNA.214-201ENST00000364201 112 ntBASIC0.72□□□□□ -2.29
SDC3O75056 SNORA1.2-201ENST00000365189 134 ntBASIC0.72□□□□□ -2.29
SDC3O75056 Y_RNA.455-201ENST00000384230 98 ntBASIC0.72□□□□□ -2.29
SDC3O75056 MIR605-201ENST00000385078 83 ntBASIC0.72□□□□□ -2.29
SDC3O75056 RNA5SP496-201ENST00000391240 109 ntBASIC0.72□□□□□ -2.29
SDC3O75056 SNORD111-201ENST00000408139 94 ntBASIC0.72□□□□□ -2.29
SDC3O75056 MIR548P-201ENST00000408336 84 ntBASIC0.72□□□□□ -2.29
SDC3O75056 AL606490.4-201ENST00000423117 127 ntBASIC0.72□□□□□ -2.29
SDC3O75056 RNU4-57P-201ENST00000515980 135 ntBASIC0.72□□□□□ -2.29
SDC3O75056 RNU6-351P-201ENST00000516097 100 ntBASIC0.72□□□□□ -2.29
SDC3O75056 AC036111.3-201ENST00000526389 112 ntBASIC0.72□□□□□ -2.29
SDC3O75056 AC023827.1-201ENST00000569247 97 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 208.9 ms