Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 RNA5SP100-201ENST00000410903 110 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 RNA5SP59-201ENST00000410922 110 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 AL158823.1-201ENST00000418441 478 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 RPS27P1-201ENST00000450552 247 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 SNORD11-201ENST00000459124 84 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 AC011604.1-201ENST00000545978 196 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 AC022217.4-201ENST00000604389 163 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 ZNF702P-202ENST00000434269 1966 ntBASIC2.21□□□□□ -2.06
NR2E3Q9Y5X4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
NR2E3Q9Y5X4 Y_RNA.203-201ENST00000364106 102 ntBASIC2.2□□□□□ -2.06
NR2E3Q9Y5X4 RNU6-296P-201ENST00000384608 107 ntBASIC2.2□□□□□ -2.06
NR2E3Q9Y5X4 AL512604.1-201ENST00000404812 257 ntBASIC2.2□□□□□ -2.06
NR2E3Q9Y5X4 AC245047.3-201ENST00000429428 127 ntBASIC2.2□□□□□ -2.06
NR2E3Q9Y5X4 AL078603.1-201ENST00000603824 313 ntBASIC2.2□□□□□ -2.06
NR2E3Q9Y5X4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.2□□□□□ -2.06
NR2E3Q9Y5X4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 Y_RNA.267-201ENST00000364679 109 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 SNORD116-18-201ENST00000383961 92 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 RNU6-239P-201ENST00000390990 99 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 RNA5SP109-201ENST00000391010 116 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 AL606517.2-201ENST00000442855 241 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 SNRPGP8-201ENST00000454064 226 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 RNA5SP220-201ENST00000516298 104 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 RNU6-1291P-201ENST00000516591 104 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 AP002004.2-201ENST00000531656 154 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 MIR3910-1-201ENST00000580936 111 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 AL359851.1-201ENST00000569460 4997 ntBASIC2.19□□□□□ -2.06
NR2E3Q9Y5X4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 RNA5SP276-201ENST00000362580 94 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 RNU6-1209P-201ENST00000363655 107 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 RNA5SP160-201ENST00000364866 120 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 RNY3P5-201ENST00000384127 102 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 RNU6-950P-201ENST00000384651 107 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 RNA5SP212-201ENST00000391223 107 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 RNA5SP496-201ENST00000391240 109 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 RNU4-43P-201ENST00000410628 137 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 RNU2-7P-201ENST00000410794 178 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 AC233266.1-201ENST00000454518 96 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 SNRPGP19-201ENST00000603826 189 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 AL512598.1-201ENST00000610158 273 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 AC242852.1-201ENST00000612151 96 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 AC244015.1-201ENST00000622301 99 ntBASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
NR2E3Q9Y5X4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 AL157777.2-201ENST00000258070 137 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 SNORD45.3-201ENST00000363836 72 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 Y_RNA.191-201ENST00000363972 113 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 RNU4-41P-201ENST00000364426 143 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 RNU6-1080P-201ENST00000383982 107 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 RNU6-484P-201ENST00000384016 107 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 MIR15B-201ENST00000385045 98 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 AL627390.1-201ENST00000396055 340 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 NDUFA4P2-201ENST00000489989 244 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 RNA5SP481-201ENST00000516814 122 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 uc_338.20-201ENST00000621563 178 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 MIR3658-201ENST00000636291 56 ntBASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
NR2E3Q9Y5X4 Y_RNA.327-201ENST00000365201 102 ntBASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 SNORD116-25-201ENST00000516517 92 ntBASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 RNU2-56P-201ENST00000516826 190 ntBASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 RNA5SP437-201ENST00000517249 129 ntBASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 RPL23AP91-201ENST00000569211 455 ntBASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 AL049861.1-201ENST00000603130 150 ntBASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 MIR8054-201ENST00000620877 86 ntBASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 MIR6734-201ENST00000621166 68 ntBASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
NR2E3Q9Y5X4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.15□□□□□ -2.06
NR2E3Q9Y5X4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
NR2E3Q9Y5X4 SNORA1B-201ENST00000362535 133 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.253-201ENST00000364562 112 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 RNA5SP138-201ENST00000365098 114 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.357-201ENST00000365487 109 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-449P-201ENST00000383914 107 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-643P-201ENST00000384018 107 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.587-201ENST00000391210 103 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 RNA5SP338-201ENST00000410495 85 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.621-201ENST00000411065 96 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.622-201ENST00000411091 108 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 AL121914.1-201ENST00000450188 156 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 RPS27P21-201ENST00000486977 252 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 RNU7-28P-201ENST00000516759 62 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 MIR4287-201ENST00000579398 78 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 AL773524.1-201ENST00000614065 229 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 AC084768.2-201ENST00000622736 221 ntBASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
NR2E3Q9Y5X4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 RNY1P11-201ENST00000363759 113 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-728P-201ENST00000365375 104 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 SNORD50.2-201ENST00000365465 70 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.400-201ENST00000383963 111 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 MIR17-201ENST00000385012 84 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 208.2 ms