Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AL096861.1-201ENST00000610899 123 ntBASIC1.06□□□□□ -2.24
PCDHGA1Q9Y5H4 AC007742.2-201ENST00000618226 398 ntBASIC1.06□□□□□ -2.24
PCDHGA1Q9Y5H4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 Y_RNA.105-201ENST00000363182 111 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 RNU6-1209P-201ENST00000363655 107 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 RNU6-674P-201ENST00000363831 107 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 RNU6-1048P-201ENST00000364054 107 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 SNORA22-201ENST00000383907 134 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 SNORA22C-201ENST00000384614 134 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 Y_RNA.569-201ENST00000384749 103 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 MIR200A-201ENST00000384875 90 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 Y_RNA.581-201ENST00000391017 97 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 SNORA36B-201ENST00000410438 131 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 RNU6-121P-201ENST00000410525 99 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 MRPL35P3-201ENST00000421557 364 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 RNU6-437P-201ENST00000459408 95 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 SNORA74.3-201ENST00000517108 154 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 MIR2681-201ENST00000581814 105 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 AC087685.1-201ENST00000587507 141 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 AC211469.2-201ENST00000605461 205 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 JPX_2.1-201ENST00000614161 69 ntBASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.05□□□□□ -2.24
PCDHGA1Q9Y5H4 RNU6-770P-201ENST00000363929 105 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 Y_RNA.214-201ENST00000364201 112 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 Y_RNA.216-201ENST00000364205 93 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 Y_RNA.276-201ENST00000364732 109 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 Y_RNA.455-201ENST00000384230 98 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 MIR516B2-201ENST00000385190 85 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 SNORA26.5-201ENST00000391215 123 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 AC063976.4-201ENST00000421971 163 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 ELOCP20-201ENST00000422460 345 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 snoU13.25-201ENST00000458945 104 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 MIR3192-201ENST00000584920 77 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 AL355297.3-201ENST00000604082 446 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 PRELID3BP2-201ENST00000605362 201 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 MIR6857-201ENST00000613267 93 ntBASIC1.04□□□□□ -2.24
PCDHGA1Q9Y5H4 SNORD114-24-201ENST00000365029 72 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 MIR15B-201ENST00000385045 98 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 MIR1285-1-201ENST00000408593 84 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 AL591704.2-201ENST00000421658 181 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 MTCO1P5-201ENST00000433573 344 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 RPS29P28-201ENST00000446439 141 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 NDUFA4P2-201ENST00000489989 244 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 SNORD79.1-201ENST00000516069 84 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 SNORD111.1-201ENST00000516421 86 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 Y_RNA.701-201ENST00000516812 110 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 SNORA40.15-201ENST00000516884 107 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 AC113195.1-201ENST00000579952 141 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 AL391903.3-201ENST00000612158 163 ntBASIC1.03□□□□□ -2.24
PCDHGA1Q9Y5H4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-899P-201ENST00000363947 107 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 SNORD14E-201ENST00000364009 85 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.202-201ENST00000364083 110 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.527-201ENST00000384573 102 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 MTCYBP6-201ENST00000441810 138 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 AC098869.1-201ENST00000481627 292 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 RPS26P48-201ENST00000491713 339 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 AC131281.1-201ENST00000522984 164 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 MIR5000-201ENST00000577717 103 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 MIR4680-201ENST00000580906 66 ntBASIC1.02□□□□□ -2.25
PCDHGA1Q9Y5H4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 AC134026.1-201ENST00000623249 2239 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 MIR373-201ENST00000362273 69 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 snoU2_19.2-201ENST00000363024 80 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-290P-201ENST00000365212 101 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.393-201ENST00000383936 102 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 MTCO2P33-201ENST00000402100 465 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 AC245047.8-201ENST00000456455 284 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 MRPS35P2-201ENST00000508242 191 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-1143P-201ENST00000516125 104 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 RNY3P15-201ENST00000516297 97 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 SNORA18.7-201ENST00000516910 131 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 AC005357.1-201ENST00000588399 301 ntBASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.01□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.19-201ENST00000362462 99 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 Y_RNA.152-201ENST00000363578 100 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-144P-201ENST00000383951 107 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 MIR520C-201ENST00000385005 87 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 MIR532-201ENST00000385025 91 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-763P-201ENST00000390865 106 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 MIR1278-201ENST00000408753 81 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 POLR2J4-204ENST00000418424 324 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 SNRPGP14-201ENST00000435400 219 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 AC002429.1-201ENST00000437672 148 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 MTND4LP30-201ENST00000454092 297 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 SNORD123-201ENST00000459473 70 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU7-43P-201ENST00000516554 64 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 RNU6-1137P-201ENST00000517073 99 ntBASIC1□□□□□ -2.25
PCDHGA1Q9Y5H4 RPL23AP91-201ENST00000569211 455 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 198.8 ms