Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
VPS4AQ9UN37 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.87□□□□□ -2.11
VPS4AQ9UN37 AL442644.1-201ENST00000454390 3105 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
VPS4AQ9UN37 RNY1P10-201ENST00000363268 113 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 RNU6-1138P-201ENST00000365359 106 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 RNU4-70P-201ENST00000384579 139 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 MIR499A-201ENST00000384903 122 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 RNU6-578P-201ENST00000390980 103 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.621-201ENST00000411065 96 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 RNU2-55P-201ENST00000411146 174 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.86□□□□□ -2.11
VPS4AQ9UN37 AC245517.4-201ENST00000448601 281 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 AC245047.8-201ENST00000456455 284 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 SNORD77.4-201ENST00000516158 81 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 MRPS18CP4-201ENST00000535821 231 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 MIR3122-201ENST00000577243 73 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 AC087685.1-201ENST00000587507 141 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 uc_338.4-201ENST00000616635 176 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 ZNF355P-201ENST00000427301 3216 ntBASIC1.86□□□□□ -2.11
VPS4AQ9UN37 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
VPS4AQ9UN37 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
VPS4AQ9UN37 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
VPS4AQ9UN37 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
VPS4AQ9UN37 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
VPS4AQ9UN37 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
VPS4AQ9UN37 RNU6-312P-201ENST00000364629 107 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 RNU6-275P-201ENST00000364910 107 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.355-201ENST00000365462 98 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 MIR194-1-201ENST00000384892 85 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 MIR676-201ENST00000390702 67 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 AL606845.1-201ENST00000404881 255 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 RNU4-43P-201ENST00000410628 137 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 RNU6-1219P-201ENST00000516143 112 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS4AQ9UN37 AC021506.2-201ENST00000612354 169 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 WWP1P1-201ENST00000466609 2769 ntBASIC1.85□□□□□ -2.11
VPS4AQ9UN37 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.84□□□□□ -2.11
VPS4AQ9UN37 MIR126-201ENST00000362291 85 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.23-201ENST00000362496 106 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.265-201ENST00000364677 108 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 SNORA25.9-201ENST00000365087 128 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.412-201ENST00000384001 104 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 RNU6-484P-201ENST00000384016 107 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 RNU6-886P-201ENST00000384319 105 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 RNU6-424P-201ENST00000384367 105 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
VPS4AQ9UN37 AL034345.1-201ENST00000407768 123 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 RNU2-7P-201ENST00000410794 178 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 AL161935.2-201ENST00000414627 60 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 HMGN2P19-201ENST00000425149 265 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS4AQ9UN37 STAG3L5P-204ENST00000443759 179 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 SNRPGP8-201ENST00000454064 226 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 SNORA25.15-201ENST00000516487 89 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 RNU6-861P-201ENST00000516745 106 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 AC109810.1-201ENST00000534066 224 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 AL160236.1-201ENST00000556317 195 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 AC008507.4-201ENST00000585464 127 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 JPX_2.1-201ENST00000614161 69 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 AC027279.3-201ENST00000625055 122 ntBASIC1.84□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.180-201ENST00000363867 113 ntBASIC1.83□□□□□ -2.12
VPS4AQ9UN37 SNORD50B-201ENST00000364995 70 ntBASIC1.83□□□□□ -2.12
VPS4AQ9UN37 RNU6-321P-201ENST00000410912 106 ntBASIC1.83□□□□□ -2.12
VPS4AQ9UN37 RPL30P13-201ENST00000418873 348 ntBASIC1.83□□□□□ -2.12
VPS4AQ9UN37 RPL31P63-201ENST00000422565 375 ntBASIC1.83□□□□□ -2.12
VPS4AQ9UN37 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.83□□□□□ -2.12
VPS4AQ9UN37 TRMT112P2-201ENST00000512910 132 ntBASIC1.83□□□□□ -2.12
VPS4AQ9UN37 MIR4713-201ENST00000582691 75 ntBASIC1.83□□□□□ -2.12
VPS4AQ9UN37 AL049861.1-201ENST00000603130 150 ntBASIC1.83□□□□□ -2.12
VPS4AQ9UN37 RNU6-661P-201ENST00000362409 107 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.182-201ENST00000363880 111 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.441-201ENST00000384123 112 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 RNU6-131P-201ENST00000391144 107 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.587-201ENST00000391210 103 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 RN7SKP51-201ENST00000410781 304 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 RNU6-561P-201ENST00000516222 102 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.714-201ENST00000517065 90 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS4AQ9UN37 MIR4709-201ENST00000577272 72 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 AC097639.2-201ENST00000603159 172 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 AL513423.1-201ENST00000621695 132 ntBASIC1.82□□□□□ -2.12
VPS4AQ9UN37 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.82□□□□□ -2.12
VPS4AQ9UN37 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS4AQ9UN37 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS4AQ9UN37 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
VPS4AQ9UN37 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
VPS4AQ9UN37 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
VPS4AQ9UN37 RNA5SP190-201ENST00000365222 118 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.466-201ENST00000384294 113 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 MIR518E-201ENST00000385252 88 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 U8.16-201ENST00000391279 133 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 RNA5SP489-201ENST00000410986 109 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 SNRPGP14-201ENST00000435400 219 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 AC005840.1-201ENST00000498412 377 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 RNA5SP445-201ENST00000515889 115 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.797-201ENST00000515977 94 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 RNU6-1007P-201ENST00000516586 107 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 RNA5SP168-201ENST00000516642 112 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 174.3 ms