Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 MIR4419B-201ENST00000577260 68 ntBASIC1.9□□□□□ -2.11
DDX56Q9NY93 AC130289.1-201ENST00000577321 73 ntBASIC1.9□□□□□ -2.11
DDX56Q9NY93 AC009779.6-201ENST00000603972 165 ntBASIC1.9□□□□□ -2.11
DDX56Q9NY93 GHRLOS.1-201ENST00000610995 70 ntBASIC1.9□□□□□ -2.11
DDX56Q9NY93 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
DDX56Q9NY93 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
DDX56Q9NY93 Y_RNA.200-201ENST00000364018 102 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 Y_RNA.229-201ENST00000364347 113 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 RNU6-493P-201ENST00000391321 108 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 RN7SKP101-201ENST00000411376 320 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.89□□□□□ -2.11
DDX56Q9NY93 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.89□□□□□ -2.11
DDX56Q9NY93 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.89□□□□□ -2.11
DDX56Q9NY93 COX6CP14-201ENST00000469580 174 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 RN7SL429P-201ENST00000479090 223 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 RN7SL489P-201ENST00000486185 223 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 RN7SL327P-201ENST00000488659 223 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 RNA5SP182-201ENST00000516064 82 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 RNU6-922P-201ENST00000516753 99 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 AL512310.8-201ENST00000550183 120 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 FAM106DP-201ENST00000586416 501 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 RN7SL853P-201ENST00000617250 223 ntBASIC1.89□□□□□ -2.11
DDX56Q9NY93 RNU6-923P-201ENST00000364753 107 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 SNORD38C-201ENST00000384381 69 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 Y_RNA.515-201ENST00000384535 112 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 MIR136-201ENST00000385207 82 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 MT-TT-201ENST00000387460 66 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.88□□□□□ -2.11
DDX56Q9NY93 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.88□□□□□ -2.11
DDX56Q9NY93 AC245047.8-201ENST00000456455 284 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 SCARNA8-201ENST00000515924 131 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 RNU6-917P-201ENST00000516294 104 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 RNU6-453P-201ENST00000516819 85 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 MIR3664-201ENST00000579074 99 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 MIR3618-201ENST00000580330 88 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 AL021707.8-201ENST00000609428 183 ntBASIC1.88□□□□□ -2.11
DDX56Q9NY93 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
DDX56Q9NY93 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
DDX56Q9NY93 Y_RNA.83-201ENST00000363005 113 ntBASIC1.87□□□□□ -2.11
DDX56Q9NY93 Y_RNA.587-201ENST00000391210 103 ntBASIC1.87□□□□□ -2.11
DDX56Q9NY93 RNU6-250P-201ENST00000516958 103 ntBASIC1.87□□□□□ -2.11
DDX56Q9NY93 MIR3945-201ENST00000581853 98 ntBASIC1.87□□□□□ -2.11
DDX56Q9NY93 AC008507.4-201ENST00000585464 127 ntBASIC1.87□□□□□ -2.11
DDX56Q9NY93 uc_338.4-201ENST00000616635 176 ntBASIC1.87□□□□□ -2.11
DDX56Q9NY93 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.87□□□□□ -2.11
DDX56Q9NY93 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.86□□□□□ -2.11
DDX56Q9NY93 RNU4-17P-201ENST00000365598 141 ntBASIC1.86□□□□□ -2.11
DDX56Q9NY93 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
DDX56Q9NY93 RNU6-381P-201ENST00000391259 108 ntBASIC1.86□□□□□ -2.11
DDX56Q9NY93 RPL39P39-201ENST00000455840 151 ntBASIC1.86□□□□□ -2.11
DDX56Q9NY93 RN7SKP88-201ENST00000516847 250 ntBASIC1.86□□□□□ -2.11
DDX56Q9NY93 MIR3122-201ENST00000577243 73 ntBASIC1.86□□□□□ -2.11
DDX56Q9NY93 7SK.8-201ENST00000612110 250 ntBASIC1.86□□□□□ -2.11
DDX56Q9NY93 7SK.11-201ENST00000615477 250 ntBASIC1.86□□□□□ -2.11
DDX56Q9NY93 7SK.13-201ENST00000622040 250 ntBASIC1.86□□□□□ -2.11
DDX56Q9NY93 Y_RNA.257-201ENST00000364596 102 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 SNORD72-201ENST00000390994 80 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 AC015922.2-201ENST00000435593 184 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.85□□□□□ -2.11
DDX56Q9NY93 RNU1-41P-201ENST00000516161 162 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 RNU1-48P-201ENST00000516400 162 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 RNU6-126P-201ENST00000516685 103 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 MIR4308-201ENST00000580634 81 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 MIR4298-201ENST00000584380 73 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 AC090425.1-201ENST00000610007 140 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 MIR8065-201ENST00000620577 100 ntBASIC1.85□□□□□ -2.11
DDX56Q9NY93 MIR411-201ENST00000362239 96 ntBASIC1.84□□□□□ -2.11
DDX56Q9NY93 Y_RNA.274-201ENST00000364714 101 ntBASIC1.84□□□□□ -2.11
DDX56Q9NY93 MIR616-201ENST00000385293 97 ntBASIC1.84□□□□□ -2.11
DDX56Q9NY93 AC003989.2-201ENST00000440224 169 ntBASIC1.84□□□□□ -2.11
DDX56Q9NY93 RNU7-149P-201ENST00000516739 59 ntBASIC1.84□□□□□ -2.11
DDX56Q9NY93 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.84□□□□□ -2.11
DDX56Q9NY93 MIR3671-201ENST00000580455 88 ntBASIC1.84□□□□□ -2.11
DDX56Q9NY93 SNORD48-201ENST00000364953 64 ntBASIC1.83□□□□□ -2.12
DDX56Q9NY93 MIR526A1-201ENST00000384897 85 ntBASIC1.83□□□□□ -2.12
DDX56Q9NY93 MIR9-3-201ENST00000385084 90 ntBASIC1.83□□□□□ -2.12
DDX56Q9NY93 AL606845.1-201ENST00000404881 255 ntBASIC1.83□□□□□ -2.12
DDX56Q9NY93 RPS29P11-201ENST00000496507 171 ntBASIC1.83□□□□□ -2.12
DDX56Q9NY93 RN7SKP164-201ENST00000516138 266 ntBASIC1.83□□□□□ -2.12
DDX56Q9NY93 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
DDX56Q9NY93 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.83□□□□□ -2.12
DDX56Q9NY93 MIR4662B-201ENST00000579498 81 ntBASIC1.83□□□□□ -2.12
DDX56Q9NY93 RNU2-4P-201ENST00000606190 192 ntBASIC1.83□□□□□ -2.12
DDX56Q9NY93 Pinc.1-201ENST00000616452 154 ntBASIC1.83□□□□□ -2.12
DDX56Q9NY93 Y_RNA.297-201ENST00000364950 91 ntBASIC1.82□□□□□ -2.12
DDX56Q9NY93 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.82□□□□□ -2.12
DDX56Q9NY93 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
DDX56Q9NY93 RNU6-1318P-201ENST00000365389 103 ntBASIC1.81□□□□□ -2.12
DDX56Q9NY93 RNU6-47P-201ENST00000383866 107 ntBASIC1.81□□□□□ -2.12
DDX56Q9NY93 MIR516B2-201ENST00000385190 85 ntBASIC1.81□□□□□ -2.12
DDX56Q9NY93 Y_RNA.622-201ENST00000411091 108 ntBASIC1.81□□□□□ -2.12
DDX56Q9NY93 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.81□□□□□ -2.12
DDX56Q9NY93 RNU6-138P-201ENST00000515952 107 ntBASIC1.81□□□□□ -2.12
DDX56Q9NY93 AC090142.3-201ENST00000519012 385 ntBASIC1.81□□□□□ -2.12
DDX56Q9NY93 CYP3A52P-201ENST00000563326 91 ntBASIC1.81□□□□□ -2.12
DDX56Q9NY93 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.81□□□□□ -2.12
DDX56Q9NY93 Y_RNA.7-201ENST00000362352 102 ntBASIC1.8□□□□□ -2.12
DDX56Q9NY93 SNORD114-1-201ENST00000362705 72 ntBASIC1.8□□□□□ -2.12
DDX56Q9NY93 Y_RNA.238-201ENST00000364441 102 ntBASIC1.8□□□□□ -2.12
DDX56Q9NY93 RNU6-200P-201ENST00000364743 107 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms