Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 Y_RNA.294-201ENST00000364916 102 ntBASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 Y_RNA.336-201ENST00000365307 109 ntBASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 SNORD88.1-201ENST00000408684 91 ntBASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 HMGN2P23-201ENST00000456759 269 ntBASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 RNU6-1270P-201ENST00000517128 108 ntBASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 AC022513.1-201ENST00000624512 117 ntBASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC87Q9NVE4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC87Q9NVE4 RNU6-1325P-201ENST00000364905 105 ntBASIC3.03□□□□□ -1.92
CCDC87Q9NVE4 RNU6-1064P-201ENST00000410626 104 ntBASIC3.03□□□□□ -1.92
CCDC87Q9NVE4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC87Q9NVE4 HMGN2P32-201ENST00000444648 269 ntBASIC3.03□□□□□ -1.92
CCDC87Q9NVE4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC87Q9NVE4 MIR3914-2-201ENST00000637339 95 ntBASIC3.03□□□□□ -1.92
CCDC87Q9NVE4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.03□□□□□ -1.92
CCDC87Q9NVE4 AL161431.1-201ENST00000618966 4205 ntBASIC3.02□□□□□ -1.93
CCDC87Q9NVE4 Y_RNA.410-201ENST00000383992 113 ntBASIC3.02□□□□□ -1.93
CCDC87Q9NVE4 RNA5SP492-201ENST00000411330 114 ntBASIC3.02□□□□□ -1.93
CCDC87Q9NVE4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC87Q9NVE4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC87Q9NVE4 RNU6-772P-201ENST00000516042 105 ntBASIC3.02□□□□□ -1.93
CCDC87Q9NVE4 AC084364.2-201ENST00000546924 395 ntBASIC3.02□□□□□ -1.93
CCDC87Q9NVE4 RNU6-309P-201ENST00000364573 106 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 RNU6-950P-201ENST00000384651 107 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 RNA5SP465-201ENST00000391195 109 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 AL035461.1-201ENST00000421490 332 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 BX510359.4-201ENST00000423750 193 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 RPL23AP42-201ENST00000471152 471 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 RNU6-113P-201ENST00000516653 101 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 AC133485.4-201ENST00000561835 220 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 AC138907.4-201ENST00000570107 226 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 AL022345.2-201ENST00000606307 135 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 AC022202.1-201ENST00000613515 211 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 AC134878.1-201ENST00000619901 243 ntBASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC87Q9NVE4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
CCDC87Q9NVE4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC87Q9NVE4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3□□□□□ -1.93
CCDC87Q9NVE4 MIR548A2-201ENST00000384956 97 ntBASIC3□□□□□ -1.93
CCDC87Q9NVE4 MIR518F-201ENST00000384973 87 ntBASIC3□□□□□ -1.93
CCDC87Q9NVE4 RNU6-440P-201ENST00000390882 105 ntBASIC3□□□□□ -1.93
CCDC87Q9NVE4 RNU11-3P-201ENST00000391111 133 ntBASIC3□□□□□ -1.93
CCDC87Q9NVE4 Y_RNA.617-201ENST00000410920 90 ntBASIC3□□□□□ -1.93
CCDC87Q9NVE4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3□□□□□ -1.93
CCDC87Q9NVE4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3□□□□□ -1.93
CCDC87Q9NVE4 SNORD45.4-201ENST00000516629 73 ntBASIC3□□□□□ -1.93
CCDC87Q9NVE4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3□□□□□ -1.93
CCDC87Q9NVE4 MIR4658-201ENST00000584344 65 ntBASIC3□□□□□ -1.93
CCDC87Q9NVE4 MIR8054-201ENST00000620877 86 ntBASIC3□□□□□ -1.93
CCDC87Q9NVE4 AC092881.1-201ENST00000638218 2733 ntBASIC2.99□□□□□ -1.93
CCDC87Q9NVE4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC87Q9NVE4 RNU6-476P-201ENST00000384726 107 ntBASIC2.99□□□□□ -1.93
CCDC87Q9NVE4 RNA5SP109-201ENST00000391010 116 ntBASIC2.99□□□□□ -1.93
CCDC87Q9NVE4 SNORD77.3-201ENST00000391113 65 ntBASIC2.99□□□□□ -1.93
CCDC87Q9NVE4 MIR548O-201ENST00000408583 114 ntBASIC2.99□□□□□ -1.93
CCDC87Q9NVE4 AL606517.2-201ENST00000442855 241 ntBASIC2.99□□□□□ -1.93
CCDC87Q9NVE4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC87Q9NVE4 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 MTND5P32-201ENST00000560711 1802 ntBASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 RNU6-1144P-201ENST00000384247 104 ntBASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 RN7SKP200-201ENST00000410564 320 ntBASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 RNU5E-3P-201ENST00000515913 68 ntBASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 RNA5SP236-201ENST00000516169 116 ntBASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 RNU6-1061P-201ENST00000516530 99 ntBASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 RNU6-826P-201ENST00000516827 104 ntBASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 MIR5007-201ENST00000583098 95 ntBASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC87Q9NVE4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 RNU6-268P-201ENST00000364174 107 ntBASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 Y_RNA.338-201ENST00000365320 114 ntBASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 SNORA80E-201ENST00000384744 137 ntBASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 SNRPGP14-201ENST00000435400 219 ntBASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 AL021397.1-201ENST00000451806 248 ntBASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 AC007336.1-201ENST00000576365 3828 ntBASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 MIR5197-201ENST00000583721 112 ntBASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 AC067747.1-201ENST00000608026 250 ntBASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
CCDC87Q9NVE4 Y_RNA.4-201ENST00000362333 112 ntBASIC2.96□□□□□ -1.94
CCDC87Q9NVE4 Y_RNA.525-201ENST00000384570 113 ntBASIC2.96□□□□□ -1.94
CCDC87Q9NVE4 STAG3L5P-204ENST00000443759 179 ntBASIC2.96□□□□□ -1.94
CCDC87Q9NVE4 CYCTP-201ENST00000504253 315 ntBASIC2.96□□□□□ -1.94
CCDC87Q9NVE4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC87Q9NVE4 MIR5094-201ENST00000578766 85 ntBASIC2.96□□□□□ -1.94
CCDC87Q9NVE4 AC027279.3-201ENST00000625055 122 ntBASIC2.96□□□□□ -1.94
CCDC87Q9NVE4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.96□□□□□ -1.94
CCDC87Q9NVE4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC87Q9NVE4 SNORD115-28-201ENST00000363931 81 ntBASIC2.95□□□□□ -1.94
CCDC87Q9NVE4 SNORD58C-201ENST00000365223 64 ntBASIC2.95□□□□□ -1.94
CCDC87Q9NVE4 Y_RNA.346-201ENST00000365385 112 ntBASIC2.95□□□□□ -1.94
CCDC87Q9NVE4 Y_RNA.651-201ENST00000459380 103 ntBASIC2.95□□□□□ -1.94
CCDC87Q9NVE4 RNU6-1149P-201ENST00000516810 97 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms