Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR1267-201ENST00000408723 78 ntBASIC2.24□□□□□ -2.05
CCDC140Q96MF4 AC022018.1-201ENST00000430685 241 ntBASIC2.24□□□□□ -2.05
CCDC140Q96MF4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC140Q96MF4 RNU6-830P-201ENST00000516353 107 ntBASIC2.24□□□□□ -2.05
CCDC140Q96MF4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC140Q96MF4 MIR4287-201ENST00000579398 78 ntBASIC2.24□□□□□ -2.05
CCDC140Q96MF4 RPL12P50-201ENST00000603116 116 ntBASIC2.24□□□□□ -2.05
CCDC140Q96MF4 AC108081.1-201ENST00000604358 221 ntBASIC2.24□□□□□ -2.05
CCDC140Q96MF4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC140Q96MF4 AC096644.4-201ENST00000563417 2912 ntBASIC2.23□□□□□ -2.05
CCDC140Q96MF4 RN7SKP192-201ENST00000411291 327 ntBASIC2.23□□□□□ -2.05
CCDC140Q96MF4 RNU6-772P-201ENST00000516042 105 ntBASIC2.23□□□□□ -2.05
CCDC140Q96MF4 FAM106DP-201ENST00000586416 501 ntBASIC2.23□□□□□ -2.05
CCDC140Q96MF4 AC002984.1-201ENST00000591692 448 ntBASIC2.23□□□□□ -2.05
CCDC140Q96MF4 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC140Q96MF4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC140Q96MF4 AL596211.1-201ENST00000569873 2277 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
CCDC140Q96MF4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC140Q96MF4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC140Q96MF4 SNORA6-201ENST00000384033 151 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 MIR526A1-201ENST00000384897 85 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 MIR512-1-201ENST00000384913 84 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 RNA5SP344-201ENST00000411081 104 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 HMGN2P35-201ENST00000412164 270 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 AL139132.1-201ENST00000431587 344 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 AC003982.1-202ENST00000469928 248 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 AL773524.1-201ENST00000614065 229 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 AC006386.2-201ENST00000624491 75 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 AC012005.1-201ENST00000624575 75 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 AC095038.3-201ENST00000634439 195 ntBASIC2.22□□□□□ -2.05
CCDC140Q96MF4 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
CCDC140Q96MF4 AC009487.2-201ENST00000420969 6821 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.280-201ENST00000364765 112 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 RNU6-439P-201ENST00000384188 106 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 SNORA27-201ENST00000384323 126 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 RNU6-851P-201ENST00000384565 107 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 SNORA40.5-201ENST00000391061 128 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.630-201ENST00000411370 108 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC140Q96MF4 RPS29P6-201ENST00000438196 145 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 AL135938.1-201ENST00000443141 297 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 RPS26P48-201ENST00000491713 339 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC140Q96MF4 RN7SKP19-201ENST00000516016 252 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 RNU6-781P-201ENST00000516377 101 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 EIF4BP1-201ENST00000554881 351 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 ZNF720P1-201ENST00000562403 1939 ntBASIC2.21□□□□□ -2.06
CCDC140Q96MF4 RNU6-414P-201ENST00000363705 104 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 RNU1-133P-201ENST00000364867 167 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.500-201ENST00000384466 111 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 SNORA44-201ENST00000384584 132 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 MIR1263-201ENST00000408324 86 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.629-201ENST00000411368 105 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 EEF1A1P41-201ENST00000414667 207 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC140Q96MF4 AC107297.1-201ENST00000459991 176 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 DEFB122-202ENST00000569013 197 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC140Q96MF4 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.2□□□□□ -2.06
CCDC140Q96MF4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC140Q96MF4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC140Q96MF4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
CCDC140Q96MF4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
CCDC140Q96MF4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC140Q96MF4 RNU6-690P-201ENST00000365242 106 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.370-201ENST00000365589 108 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC140Q96MF4 RPL23AP6-201ENST00000446637 472 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 RNU7-80P-201ENST00000459562 61 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 RNU6-240P-201ENST00000516098 97 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 RNA5SP367-201ENST00000516557 118 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 IGLV3-17-201ENST00000519099 244 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 MIR4513-201ENST00000581077 86 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 MIR6852-201ENST00000621699 66 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 AL391516.1-201ENST00000554380 2449 ntBASIC2.19□□□□□ -2.06
CCDC140Q96MF4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC140Q96MF4 MIR302B-201ENST00000362188 73 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.366-201ENST00000365540 102 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 SNORD20-201ENST00000384550 80 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 MIR181B1-201ENST00000385240 110 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 AL627390.1-201ENST00000396055 340 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.617-201ENST00000410920 90 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 AC004965.1-201ENST00000413033 213 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 AC011753.1-201ENST00000451001 220 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 RN7SL499P-201ENST00000481141 276 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.712-201ENST00000517011 92 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 AC090821.2-201ENST00000523552 176 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 IGKV1-22-201ENST00000524313 326 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 MIR548AR-201ENST00000582191 57 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 HSPE1P19-201ENST00000603327 295 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 AL137067.1-201ENST00000615933 120 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 AL137790.1-201ENST00000634283 177 ntBASIC2.18□□□□□ -2.06
CCDC140Q96MF4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
CCDC140Q96MF4 SNORA80A-201ENST00000363922 136 ntBASIC2.17□□□□□ -2.06
CCDC140Q96MF4 SNORA1.2-201ENST00000365189 134 ntBASIC2.17□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.510-201ENST00000384511 114 ntBASIC2.17□□□□□ -2.06
CCDC140Q96MF4 MIR570-201ENST00000384917 97 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms