Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 Y_RNA.394-201ENST00000383942 103 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 AL603910.2-201ENST00000407268 136 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 SNORD124-201ENST00000459577 104 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 RNU6-1143P-201ENST00000516125 104 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 MIR5688-201ENST00000580619 83 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 AC211469.2-201ENST00000605461 205 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 Pinc.1-201ENST00000616452 154 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 AC008133.2-201ENST00000624540 351 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 AC134026.1-201ENST00000623249 2239 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 MIR103A2-201ENST00000362154 78 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.105-201ENST00000363182 111 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.813-201ENST00000364639 102 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.327-201ENST00000365201 102 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.389-201ENST00000383924 113 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.455-201ENST00000384230 98 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 RNA5SP496-201ENST00000391240 109 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 MIR1302-7-201ENST00000408841 72 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.637-201ENST00000459424 114 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 RNU2-13P-201ENST00000515909 113 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 RNU6-397P-201ENST00000516226 104 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 RPL23AP91-201ENST00000569211 455 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 AC113195.1-201ENST00000579952 141 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 MIR4653-201ENST00000585107 83 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 AC013791.1-201ENST00000616619 62 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 AC022140.2-201ENST00000623500 188 ntBASIC0.69□□□□□ -2.3
RPUSD4Q96CM3 RNU6-1272P-201ENST00000362776 107 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 snoU2_19.2-201ENST00000363024 80 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 RNU6-770P-201ENST00000363929 105 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.214-201ENST00000364201 112 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 RNU6-450P-201ENST00000364654 107 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 RNU6-763P-201ENST00000390865 106 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 FABP5P4-201ENST00000437203 171 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 COX6CP14-201ENST00000469580 174 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 RNA5SP458-201ENST00000516188 119 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 RNA5SP255-201ENST00000516370 107 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 RNU2-31P-201ENST00000516954 155 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 AC020661.2-201ENST00000560114 134 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 MIR548AR-201ENST00000582191 57 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 AC106800.4-201ENST00000614905 153 ntBASIC0.68□□□□□ -2.3
RPUSD4Q96CM3 UBE2WP1-201ENST00000362030 340 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.138-201ENST00000363462 102 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.217-201ENST00000364214 105 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 RNU6-1138P-201ENST00000365359 106 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.537-201ENST00000384626 109 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 SNORD72-201ENST00000390994 80 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 U8.17-201ENST00000391292 132 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.602-201ENST00000410535 92 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 ELOCP20-201ENST00000422460 345 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 AC092473.1-201ENST00000441098 221 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 MTCYBP6-201ENST00000441810 138 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.641-201ENST00000459414 105 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 PDCD5P2-201ENST00000507570 312 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 RNU4-57P-201ENST00000515980 135 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 RNU6-351P-201ENST00000516097 100 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 SNORA40.15-201ENST00000516884 107 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 MIR3171-201ENST00000584270 74 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 MIR4251-201ENST00000635819 61 ntBASIC0.67□□□□□ -2.3
RPUSD4Q96CM3 HSBP1P2-201ENST00000299671 229 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 RNU6-797P-201ENST00000363101 109 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 RNU6-1205P-201ENST00000363625 106 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 SNORA1.2-201ENST00000365189 134 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 RNU6-53P-201ENST00000365367 106 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.541-201ENST00000384640 113 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 MIR100-201ENST00000385259 80 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 SNORD28B-201ENST00000390993 75 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 SNORA53-201ENST00000391141 249 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 MTCO2P33-201ENST00000402100 465 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 MIR1278-201ENST00000408753 81 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.604-201ENST00000410574 102 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 MTCO2P12-201ENST00000427426 682 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 MRPS35P2-201ENST00000508242 191 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 ACA64.5-201ENST00000516207 127 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 AC131281.1-201ENST00000522984 164 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 MIR4680-201ENST00000580906 66 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 AC131055.1-201ENST00000584626 316 ntBASIC0.66□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.152-201ENST00000363578 100 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 RNU6-1067P-201ENST00000384752 107 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 MIR532-201ENST00000385025 91 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 MIR526A2-201ENST00000390198 65 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 MIR802-201ENST00000390235 94 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 RNU6-613P-201ENST00000410412 108 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 AC006461.1-201ENST00000412637 326 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 AC005840.1-201ENST00000498412 377 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 SNORA27.4-201ENST00000516650 95 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 MIR5692C2-201ENST00000577959 77 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 MIR4781-201ENST00000585250 76 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 AL512605.2-201ENST00000592972 256 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 snoU13.31-201ENST00000607291 104 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 uc_338.4-201ENST00000616635 176 ntBASIC0.65□□□□□ -2.31
RPUSD4Q96CM3 Y_RNA.19-201ENST00000362462 99 ntBASIC0.64□□□□□ -2.31
RPUSD4Q96CM3 SNORA25.3-201ENST00000363205 127 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 188.4 ms