Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC093850.1-201ENST00000454121 251 ntBASIC1.99□□□□□ -2.09
CHMP4CQ96CF2 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.99□□□□□ -2.09
CHMP4CQ96CF2 MIR502-201ENST00000606349 86 ntBASIC1.99□□□□□ -2.09
CHMP4CQ96CF2 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.99□□□□□ -2.09
CHMP4CQ96CF2 AP000648.3-201ENST00000623539 4507 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 SNORD33-201ENST00000362761 85 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 Y_RNA.476-201ENST00000384347 108 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 MIR626-201ENST00000385032 94 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 MT-TG-201ENST00000387429 68 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 SNORD58.1-201ENST00000391313 66 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 MIR934-201ENST00000401241 83 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 SNORD11-201ENST00000459124 84 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 AC106754.2-201ENST00000623006 233 ntBASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
CHMP4CQ96CF2 RNU4-17P-201ENST00000365598 141 ntBASIC1.97□□□□□ -2.09
CHMP4CQ96CF2 RN7SKP51-201ENST00000410781 304 ntBASIC1.97□□□□□ -2.09
CHMP4CQ96CF2 RN7SKP101-201ENST00000411376 320 ntBASIC1.97□□□□□ -2.09
CHMP4CQ96CF2 AL603825.1-201ENST00000438481 80 ntBASIC1.97□□□□□ -2.09
CHMP4CQ96CF2 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.97□□□□□ -2.09
CHMP4CQ96CF2 NDUFA4P2-201ENST00000489989 244 ntBASIC1.97□□□□□ -2.09
CHMP4CQ96CF2 AC079140.2-201ENST00000506193 142 ntBASIC1.97□□□□□ -2.09
CHMP4CQ96CF2 RNA5SP458-201ENST00000516188 119 ntBASIC1.97□□□□□ -2.09
CHMP4CQ96CF2 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.97□□□□□ -2.09
CHMP4CQ96CF2 SNORD50B-201ENST00000364995 70 ntBASIC1.96□□□□□ -2.1
CHMP4CQ96CF2 MIR452-201ENST00000385020 85 ntBASIC1.96□□□□□ -2.1
CHMP4CQ96CF2 CBX3P4-201ENST00000538909 354 ntBASIC1.96□□□□□ -2.1
CHMP4CQ96CF2 DNAJC19P9-201ENST00000555084 351 ntBASIC1.96□□□□□ -2.1
CHMP4CQ96CF2 AL049861.1-201ENST00000603130 150 ntBASIC1.96□□□□□ -2.1
CHMP4CQ96CF2 uc_338.4-201ENST00000616635 176 ntBASIC1.96□□□□□ -2.1
CHMP4CQ96CF2 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.229-201ENST00000364347 113 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 RNY4P28-201ENST00000365281 93 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.336-201ENST00000365307 109 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 RNU6-442P-201ENST00000383968 104 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 RNU4-62P-201ENST00000410125 130 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 COX6CP14-201ENST00000469580 174 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 MIR3937-201ENST00000580135 106 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 MIR4422-201ENST00000581938 83 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 AC008507.4-201ENST00000585464 127 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 AL021707.8-201ENST00000609428 183 ntBASIC1.95□□□□□ -2.1
CHMP4CQ96CF2 RNU6-653P-201ENST00000363074 106 ntBASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 SNORD1A-201ENST00000364968 72 ntBASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 RNU6-1065P-201ENST00000384513 106 ntBASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.515-201ENST00000384535 112 ntBASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 AC019176.1-201ENST00000518519 225 ntBASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 AL645939.4-201ENST00000604495 135 ntBASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 AC011921.3-201ENST00000605540 361 ntBASIC1.94□□□□□ -2.1
CHMP4CQ96CF2 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 MIR302D-201ENST00000362275 68 ntBASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.572-201ENST00000384757 98 ntBASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.587-201ENST00000391210 103 ntBASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.626-201ENST00000411288 95 ntBASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 SNX2P2-201ENST00000424553 323 ntBASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 AC245047.8-201ENST00000456455 284 ntBASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 RNU6-322P-201ENST00000516010 103 ntBASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 AP000942.3-201ENST00000603702 160 ntBASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 AL365434.2-201ENST00000607979 234 ntBASIC1.93□□□□□ -2.1
CHMP4CQ96CF2 RNU6-379P-201ENST00000363813 104 ntBASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.199-201ENST00000364014 102 ntBASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 RNY1-201ENST00000364228 113 ntBASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.308-201ENST00000365043 101 ntBASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.552-201ENST00000384665 112 ntBASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 MIR1298-201ENST00000408783 112 ntBASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 AC092991.1-201ENST00000477176 376 ntBASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 RN7SKP164-201ENST00000516138 266 ntBASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 RNU7-149P-201ENST00000516739 59 ntBASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
CHMP4CQ96CF2 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.200-201ENST00000364018 102 ntBASIC1.91□□□□□ -2.1
CHMP4CQ96CF2 RNU1-42P-201ENST00000364033 160 ntBASIC1.91□□□□□ -2.1
CHMP4CQ96CF2 SNORD72-201ENST00000390994 80 ntBASIC1.91□□□□□ -2.1
CHMP4CQ96CF2 RNU1-78P-201ENST00000391248 165 ntBASIC1.91□□□□□ -2.1
CHMP4CQ96CF2 MIR1323-201ENST00000408090 73 ntBASIC1.91□□□□□ -2.1
CHMP4CQ96CF2 RNU6-388P-201ENST00000517012 105 ntBASIC1.91□□□□□ -2.1
CHMP4CQ96CF2 RNU6-389P-201ENST00000517048 105 ntBASIC1.91□□□□□ -2.1
CHMP4CQ96CF2 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.91□□□□□ -2.1
CHMP4CQ96CF2 Y_RNA.338-201ENST00000365320 114 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 SNORA2.2-201ENST00000365473 135 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 SNORD38C-201ENST00000384381 69 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 MIR616-201ENST00000385293 97 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 RNU6-381P-201ENST00000391259 108 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 RNU6-493P-201ENST00000391321 108 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 BTF3P4-201ENST00000418852 495 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 MIR4662B-201ENST00000579498 81 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 MIR3683-201ENST00000580847 82 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 AL391903.3-201ENST00000612158 163 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 AC141273.2-201ENST00000618989 130 ntBASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CHMP4CQ96CF2 Y_RNA.83-201ENST00000363005 113 ntBASIC1.89□□□□□ -2.11
CHMP4CQ96CF2 RNU6-103P-201ENST00000363686 107 ntBASIC1.89□□□□□ -2.11
CHMP4CQ96CF2 snoU2_19.4-201ENST00000364329 80 ntBASIC1.89□□□□□ -2.11
CHMP4CQ96CF2 RNU6-923P-201ENST00000364753 107 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms