Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AL355596.1-201ENST00000565399 3996 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 Y_RNA.168-201ENST00000363740 102 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNU6-686P-201ENST00000364839 107 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNA5SP167-201ENST00000365461 116 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 MIR9-2-201ENST00000384838 87 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 MIR206-201ENST00000384872 86 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNU6-1319P-201ENST00000390855 104 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNU6-747P-201ENST00000390928 104 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNU6-241P-201ENST00000391148 104 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNU6-177P-201ENST00000411257 104 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RN7SKP192-201ENST00000411291 327 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 ARF4P2-201ENST00000430209 526 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 snoU13.11-201ENST00000459219 104 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNU6-1041P-201ENST00000516254 102 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNU6-1108P-201ENST00000516308 104 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNU6-687P-201ENST00000516443 89 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RNU7-181P-201ENST00000517234 74 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 AP000867.2-201ENST00000532468 320 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 MIR4762-201ENST00000585261 75 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 AL137790.1-201ENST00000634283 177 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 U6.108-201ENST00000637764 58 ntBASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.33□□□□□ -1.88
NPAS3Q8IXF0 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 RNA5SP323-201ENST00000391094 133 ntBASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 AP002884.2-201ENST00000471647 395 ntBASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 UBL5P3-201ENST00000475112 231 ntBASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 RNU1-142P-201ENST00000516682 145 ntBASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 RNU6-586P-201ENST00000517265 104 ntBASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 NDUFB9P3-201ENST00000521269 501 ntBASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 MIR3152-201ENST00000579801 74 ntBASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 MIR4765-201ENST00000585007 77 ntBASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 uc_338.25-201ENST00000613756 156 ntBASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.32□□□□□ -1.88
NPAS3Q8IXF0 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 MIR30E-201ENST00000362104 92 ntBASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 U8.5-201ENST00000364528 136 ntBASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 AC087499.7-201ENST00000441958 109 ntBASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 RNU7-23P-201ENST00000459465 62 ntBASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 RN7SL330P-201ENST00000469709 307 ntBASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.31□□□□□ -1.88
NPAS3Q8IXF0 AC091152.2-201ENST00000591628 2569 ntBASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 RNA5SP138-201ENST00000365098 114 ntBASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 SNORA54-201ENST00000384281 123 ntBASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 RNU6-540P-201ENST00000384622 101 ntBASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 AC006539.3-201ENST00000454258 129 ntBASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 RNU6-991P-201ENST00000516168 107 ntBASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 Y_RNA.681-201ENST00000516445 113 ntBASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 U6.111-201ENST00000636093 83 ntBASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NPAS3Q8IXF0 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-34-201ENST00000362441 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-12-201ENST00000362583 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-29-201ENST00000362834 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-9-201ENST00000362912 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-21-201ENST00000362963 81 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-14-201ENST00000363090 81 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-41-201ENST00000363608 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-11-201ENST00000363616 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-5-201ENST00000363633 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORA5B-201ENST00000363786 132 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-4-201ENST00000363810 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-6-201ENST00000363942 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-42-201ENST00000364273 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-15-201ENST00000364809 81 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-26-201ENST00000365067 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-10-201ENST00000365073 81 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-43-201ENST00000365503 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORD115-36-201ENST00000365629 82 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 SNORA8-201ENST00000384574 139 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 Y_RNA.532-201ENST00000384590 113 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 RNU6-1190P-201ENST00000410811 104 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 RPPH1-2P-201ENST00000516688 293 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 RNU6-1116P-201ENST00000517269 99 ntBASIC3.29□□□□□ -1.88
NPAS3Q8IXF0 MIR4672-201ENST00000583126 81 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms