Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC069257.2-201ENST00000441819 155 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 RPL23AP63-201ENST00000498752 471 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 AC114811.1-201ENST00000507207 168 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 Y_RNA.686-201ENST00000516548 134 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXA4Q00056 MIR3129-201ENST00000581095 76 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
HOXA4Q00056 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.89□□□□□ -2.11
HOXA4Q00056 Y_RNA.127-201ENST00000363386 109 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 SNORD14E-201ENST00000364009 85 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 RNU6-268P-201ENST00000364174 107 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 snoU2-30.1-201ENST00000365012 70 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 RNU6-44P-201ENST00000384045 107 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 SNORA67.3-201ENST00000384366 140 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 SNORA80E-201ENST00000384744 137 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 MIR520A-201ENST00000384862 85 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 MIR548A2-201ENST00000384956 97 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 RNA5SP508-201ENST00000411327 119 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXA4Q00056 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXA4Q00056 SNRPGP14-201ENST00000435400 219 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXA4Q00056 SCARNA16.3-201ENST00000516595 184 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 RNU2-60P-201ENST00000517290 128 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXA4Q00056 MIR5007-201ENST00000583098 95 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 SNORA28-201ENST00000606769 126 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 AP001340.1-201ENST00000624405 217 ntBASIC1.88□□□□□ -2.11
HOXA4Q00056 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
HOXA4Q00056 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.87□□□□□ -2.11
HOXA4Q00056 MTND5P32-201ENST00000560711 1802 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 RNU6-888P-201ENST00000363010 101 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 RNU6-215P-201ENST00000365169 102 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 SNORD24-201ENST00000383884 75 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 SNORD116-14-201ENST00000383894 92 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 SNORD116-17-201ENST00000383929 92 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 SNORD116-15-201ENST00000384445 92 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 SNORD116-19-201ENST00000384729 92 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 MIR802-201ENST00000390235 94 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
HOXA4Q00056 U8.16-201ENST00000391279 133 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 RNA5SP100-201ENST00000410903 110 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 RNA5SP59-201ENST00000410922 110 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXA4Q00056 SNRPGP13-201ENST00000442212 177 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 RNU6-62P-201ENST00000516526 102 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 RNU1-104P-201ENST00000517280 175 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 AP001328.1-201ENST00000528550 176 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 AC006441.5-201ENST00000612680 209 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 AC245884.12-201ENST00000615364 59 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.87□□□□□ -2.11
HOXA4Q00056 FO624990.1-201ENST00000636373 85 ntBASIC1.87□□□□□ -2.11
HOXA4Q00056 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
HOXA4Q00056 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
HOXA4Q00056 MIRLET7G-201ENST00000362280 84 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 U8.1-201ENST00000362843 134 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 RNU6-915P-201ENST00000364943 103 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 RNU6-442P-201ENST00000383968 104 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 RNU6-163P-201ENST00000384396 106 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 SNORA64-201ENST00000384674 134 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 RNU6-1031P-201ENST00000384773 107 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 MIR518F-201ENST00000384973 87 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 AL034345.1-201ENST00000407768 123 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 AF228730.3-201ENST00000436691 102 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXA4Q00056 SNORA18.4-201ENST00000516440 124 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 RNA5SP24-201ENST00000516478 95 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 RNA5SP168-201ENST00000516642 112 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 MIR4529-201ENST00000578110 78 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 AC131055.1-201ENST00000584626 316 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 AL365205.2-201ENST00000594586 68 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 AC011603.4-201ENST00000611325 277 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 U1.36-201ENST00000620684 176 ntBASIC1.86□□□□□ -2.11
HOXA4Q00056 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
HOXA4Q00056 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
HOXA4Q00056 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
HOXA4Q00056 RNU6-235P-201ENST00000362644 107 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 RNA5SP393-201ENST00000363423 117 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 RNU6-429P-201ENST00000384582 108 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 Y_RNA.547-201ENST00000384654 119 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 SNORD77.3-201ENST00000391113 65 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 MIR548O-201ENST00000408583 114 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 SUMO1P4-201ENST00000429430 302 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 AC055731.1-201ENST00000474387 401 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 RNU6-659P-201ENST00000516454 104 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 RNU7-25P-201ENST00000516544 62 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 RNU2-19P-201ENST00000517288 84 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 AL590808.1-201ENST00000618696 141 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 TUG1_4.1-201ENST00000619464 181 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 AC064859.1-201ENST00000624741 174 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.85□□□□□ -2.11
HOXA4Q00056 ZNF720P1-201ENST00000562403 1939 ntBASIC1.85□□□□□ -2.11
HOXA4Q00056 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
HOXA4Q00056 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
HOXA4Q00056 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.84□□□□□ -2.11
HOXA4Q00056 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms