Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC091931.1-201ENST00000623488 728 ntBASIC-0.45□□□□□ -2.48
FOXA3P55318 Z97988.1-201ENST00000637697 135 ntBASIC-0.45□□□□□ -2.48
FOXA3P55318 Y_RNA.241-201ENST00000364470 117 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 SNORD49B-201ENST00000365172 72 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 Y_RNA.358-201ENST00000365491 99 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 MIR196A2-201ENST00000385189 110 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 AL603910.2-201ENST00000407268 136 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 MIR1278-201ENST00000408753 81 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 RNU4-55P-201ENST00000410731 137 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC-0.46□□□□□ -2.48
FOXA3P55318 RPL39P25-201ENST00000449384 154 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 TRBVB-201ENST00000477100 408 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 RNU6-256P-201ENST00000516747 97 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 RNU6-135P-201ENST00000516769 101 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC-0.46□□□□□ -2.48
FOXA3P55318 MIR4639-201ENST00000584938 69 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 AC073648.5-201ENST00000603502 305 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 AC006441.5-201ENST00000612680 209 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 MIR4788-201ENST00000639104 80 ntBASIC-0.46□□□□□ -2.48
FOXA3P55318 SNORD114-31-201ENST00000363219 75 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 SNORD114-28-201ENST00000363610 72 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 Y_RNA.212-201ENST00000364177 102 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 SNORD14C-201ENST00000365382 88 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 Y_RNA.412-201ENST00000384001 104 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 Y_RNA.547-201ENST00000384654 119 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 RNU6-648P-201ENST00000410190 107 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 RNU6-1068P-201ENST00000410958 103 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 RPL21P38-201ENST00000418090 167 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 AL138752.1-201ENST00000452964 351 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 Y_RNA.665-201ENST00000516177 98 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 Y_RNA.666-201ENST00000516187 112 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 RNU7-25P-201ENST00000516544 62 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 RNU6-835P-201ENST00000516974 104 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 IGLVI-20-201ENST00000519296 130 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-0.47□□□□□ -2.48
FOXA3P55318 AC245884.10-201ENST00000597355 337 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 AP001330.5-201ENST00000607176 411 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 MIR8064-201ENST00000612863 90 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 MIR6082-201ENST00000613604 109 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 AL162726.3-218ENST00000636401 95 ntBASIC-0.47□□□□□ -2.48
FOXA3P55318 RNU6-1322P-201ENST00000364309 107 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 RNU6-596P-201ENST00000365395 98 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 RNU6-1323P-201ENST00000384025 107 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 RNU6-842P-201ENST00000384269 107 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 RNU6-291P-201ENST00000384720 107 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 RNU6-535P-201ENST00000384722 107 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 USP9YP30-201ENST00000430729 455 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC-0.48□□□□□ -2.49
FOXA3P55318 AC011352.1-201ENST00000512300 793 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 RNU6-436P-201ENST00000516171 114 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 MTND5P34-201ENST00000568888 325 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 MIR5706-201ENST00000579841 80 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.48□□□□□ -2.49
FOXA3P55318 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.48□□□□□ -2.49
FOXA3P55318 Y_RNA.135-201ENST00000363439 95 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 Y_RNA.280-201ENST00000364765 112 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 SNORD116-11-201ENST00000383882 92 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6-926P-201ENST00000384075 107 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 Y_RNA.450-201ENST00000384198 113 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6-708P-201ENST00000384217 107 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6-480P-201ENST00000384332 107 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 SNORA72.6-201ENST00000384520 129 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6-1190P-201ENST00000410811 104 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RN7SKP142-201ENST00000411236 328 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6-1199P-201ENST00000411249 104 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 AL365203.2-201ENST00000423444 196 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 MTND3P21-201ENST00000433774 331 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU7-73P-201ENST00000458743 63 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC-0.49□□□□□ -2.49
FOXA3P55318 MTND3P3-201ENST00000505004 126 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6-155P-201ENST00000516347 100 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6-966P-201ENST00000516479 104 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6-897P-201ENST00000517135 105 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 AC024405.2-202ENST00000532731 184 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 CR383656.4-201ENST00000546909 122 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.49□□□□□ -2.49
FOXA3P55318 MIR4677-201ENST00000584153 80 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 AC010205.1-201ENST00000616668 449 ntBASIC-0.49□□□□□ -2.49
FOXA3P55318 RNU6-1301P-201ENST00000362724 104 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-0.5□□□□□ -2.49
FOXA3P55318 RNU7-66P-201ENST00000459469 62 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 AC114755.3-201ENST00000481111 251 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 AC026782.1-201ENST00000512952 449 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 RNU6-470P-201ENST00000515954 104 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 RNU6-273P-201ENST00000516937 96 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 RNU7-116P-201ENST00000516940 62 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 MIR5701-3-201ENST00000578890 82 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 MIR5188-201ENST00000583467 113 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 MIR5701-1-201ENST00000585138 82 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 AC027449.1-201ENST00000608890 407 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 MIR5701-2-201ENST00000615634 82 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 MIR6779-201ENST00000617283 64 ntBASIC-0.5□□□□□ -2.49
FOXA3P55318 SNORD115-34-201ENST00000362441 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-12-201ENST00000362583 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.51□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms