Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 SNORA20-201ENST00000384662 132 ntBASIC1.92□□□□□ -2.1
TTC3P53804 MIR144-201ENST00000384886 86 ntBASIC1.92□□□□□ -2.1
TTC3P53804 MIR218-1-201ENST00000384999 110 ntBASIC1.92□□□□□ -2.1
TTC3P53804 Y_RNA.586-201ENST00000391146 98 ntBASIC1.92□□□□□ -2.1
TTC3P53804 SNORD77.4-201ENST00000516158 81 ntBASIC1.92□□□□□ -2.1
TTC3P53804 RNU6-971P-201ENST00000516920 106 ntBASIC1.92□□□□□ -2.1
TTC3P53804 MIR338-201ENST00000636369 67 ntBASIC1.92□□□□□ -2.1
TTC3P53804 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
TTC3P53804 MIR367-201ENST00000362299 68 ntBASIC1.91□□□□□ -2.1
TTC3P53804 SNORD20-201ENST00000384550 80 ntBASIC1.91□□□□□ -2.1
TTC3P53804 MIR29C-201ENST00000385231 88 ntBASIC1.91□□□□□ -2.1
TTC3P53804 SNORA26-201ENST00000391286 122 ntBASIC1.91□□□□□ -2.1
TTC3P53804 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.91□□□□□ -2.1
TTC3P53804 RNU7-26P-201ENST00000458980 63 ntBASIC1.91□□□□□ -2.1
TTC3P53804 RNA5SP153-201ENST00000516498 76 ntBASIC1.91□□□□□ -2.1
TTC3P53804 Y_RNA.714-201ENST00000517065 90 ntBASIC1.91□□□□□ -2.1
TTC3P53804 RNU6-365P-201ENST00000517113 106 ntBASIC1.91□□□□□ -2.1
TTC3P53804 AC120024.3-201ENST00000603167 156 ntBASIC1.91□□□□□ -2.1
TTC3P53804 Y_RNA.127-201ENST00000363386 109 ntBASIC1.91□□□□□ -2.1
TTC3P53804 Y_RNA.242-201ENST00000364473 110 ntBASIC1.91□□□□□ -2.1
TTC3P53804 SNORA8-201ENST00000384574 139 ntBASIC1.91□□□□□ -2.1
TTC3P53804 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
TTC3P53804 HMGN1P7-201ENST00000491722 313 ntBASIC1.91□□□□□ -2.1
TTC3P53804 MIR378D2-201ENST00000580636 98 ntBASIC1.91□□□□□ -2.1
TTC3P53804 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.91□□□□□ -2.1
TTC3P53804 RNU6-461P-201ENST00000364195 107 ntBASIC1.9□□□□□ -2.11
TTC3P53804 SNORA6-201ENST00000384033 151 ntBASIC1.9□□□□□ -2.11
TTC3P53804 MIR569-201ENST00000385228 96 ntBASIC1.9□□□□□ -2.11
TTC3P53804 Y_RNA.622-201ENST00000411091 108 ntBASIC1.9□□□□□ -2.11
TTC3P53804 BX510359.4-201ENST00000423750 193 ntBASIC1.9□□□□□ -2.11
TTC3P53804 AL021397.1-201ENST00000451806 248 ntBASIC1.9□□□□□ -2.11
TTC3P53804 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.9□□□□□ -2.11
TTC3P53804 RNU6-341P-201ENST00000516973 96 ntBASIC1.9□□□□□ -2.11
TTC3P53804 MIR4781-201ENST00000585250 76 ntBASIC1.9□□□□□ -2.11
TTC3P53804 U7.2-201ENST00000607576 63 ntBASIC1.9□□□□□ -2.11
TTC3P53804 TUG1_4.1-201ENST00000619464 181 ntBASIC1.9□□□□□ -2.11
TTC3P53804 AP001340.1-201ENST00000624405 217 ntBASIC1.9□□□□□ -2.11
TTC3P53804 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
TTC3P53804 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
TTC3P53804 RNU6-442P-201ENST00000383968 104 ntBASIC1.9□□□□□ -2.11
TTC3P53804 SNORA75.5-201ENST00000391291 81 ntBASIC1.9□□□□□ -2.11
TTC3P53804 SNORD23.1-201ENST00000408212 104 ntBASIC1.9□□□□□ -2.11
TTC3P53804 AL158823.1-201ENST00000418441 478 ntBASIC1.9□□□□□ -2.11
TTC3P53804 AC009238.1-201ENST00000442165 424 ntBASIC1.9□□□□□ -2.11
TTC3P53804 AC009237.6-201ENST00000446969 424 ntBASIC1.9□□□□□ -2.11
TTC3P53804 AC018868.1-201ENST00000491307 315 ntBASIC1.9□□□□□ -2.11
TTC3P53804 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.9□□□□□ -2.11
TTC3P53804 RNU6-1290P-201ENST00000362957 109 ntBASIC1.89□□□□□ -2.11
TTC3P53804 RNU6-1019P-201ENST00000364424 107 ntBASIC1.89□□□□□ -2.11
TTC3P53804 RNU6-309P-201ENST00000364573 106 ntBASIC1.89□□□□□ -2.11
TTC3P53804 RNU6-1138P-201ENST00000365359 106 ntBASIC1.89□□□□□ -2.11
TTC3P53804 MIR624-201ENST00000385217 97 ntBASIC1.89□□□□□ -2.11
TTC3P53804 SNORA40.5-201ENST00000391061 128 ntBASIC1.89□□□□□ -2.11
TTC3P53804 AC006461.1-201ENST00000412637 326 ntBASIC1.89□□□□□ -2.11
TTC3P53804 AL606517.2-201ENST00000442855 241 ntBASIC1.89□□□□□ -2.11
TTC3P53804 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.89□□□□□ -2.11
TTC3P53804 RNU1-131P-201ENST00000458943 161 ntBASIC1.89□□□□□ -2.11
TTC3P53804 IGLV3-17-201ENST00000519099 244 ntBASIC1.89□□□□□ -2.11
TTC3P53804 AC024995.1-201ENST00000523014 93 ntBASIC1.89□□□□□ -2.11
TTC3P53804 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
TTC3P53804 SNORA1B-201ENST00000362535 133 ntBASIC1.88□□□□□ -2.11
TTC3P53804 Y_RNA.91-201ENST00000363042 107 ntBASIC1.88□□□□□ -2.11
TTC3P53804 SNORD68-201ENST00000363214 84 ntBASIC1.88□□□□□ -2.11
TTC3P53804 Y_RNA.253-201ENST00000364562 112 ntBASIC1.88□□□□□ -2.11
TTC3P53804 Y_RNA.294-201ENST00000364916 102 ntBASIC1.88□□□□□ -2.11
TTC3P53804 MIR17-201ENST00000385012 84 ntBASIC1.88□□□□□ -2.11
TTC3P53804 CST2P1-201ENST00000425770 87 ntBASIC1.88□□□□□ -2.11
TTC3P53804 Y_RNA.692-201ENST00000516627 105 ntBASIC1.88□□□□□ -2.11
TTC3P53804 MIR4419B-201ENST00000577260 68 ntBASIC1.88□□□□□ -2.11
TTC3P53804 MIR4762-201ENST00000585261 75 ntBASIC1.88□□□□□ -2.11
TTC3P53804 MIR502-201ENST00000606349 86 ntBASIC1.88□□□□□ -2.11
TTC3P53804 SNORA67.1-201ENST00000364749 141 ntBASIC1.88□□□□□ -2.11
TTC3P53804 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
TTC3P53804 MIR891A-201ENST00000401237 79 ntBASIC1.88□□□□□ -2.11
TTC3P53804 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.88□□□□□ -2.11
TTC3P53804 OR9P1P-201ENST00000496431 281 ntBASIC1.88□□□□□ -2.11
TTC3P53804 RNU6-1053P-201ENST00000515930 101 ntBASIC1.88□□□□□ -2.11
TTC3P53804 CYCSP26-201ENST00000534107 320 ntBASIC1.88□□□□□ -2.11
TTC3P53804 AC133485.4-201ENST00000561835 220 ntBASIC1.88□□□□□ -2.11
TTC3P53804 AC138907.4-201ENST00000570107 226 ntBASIC1.88□□□□□ -2.11
TTC3P53804 MIR3169-201ENST00000578032 83 ntBASIC1.88□□□□□ -2.11
TTC3P53804 MIR4662B-201ENST00000579498 81 ntBASIC1.88□□□□□ -2.11
TTC3P53804 AC073413.2-201ENST00000604332 360 ntBASIC1.88□□□□□ -2.11
TTC3P53804 Y_RNA.99-201ENST00000363138 105 ntBASIC1.87□□□□□ -2.11
TTC3P53804 SNORA38-201ENST00000363946 132 ntBASIC1.87□□□□□ -2.11
TTC3P53804 Y_RNA.273-201ENST00000364703 102 ntBASIC1.87□□□□□ -2.11
TTC3P53804 RNU6-1336P-201ENST00000383886 109 ntBASIC1.87□□□□□ -2.11
TTC3P53804 Y_RNA.525-201ENST00000384570 113 ntBASIC1.87□□□□□ -2.11
TTC3P53804 MIR524-201ENST00000385242 87 ntBASIC1.87□□□□□ -2.11
TTC3P53804 RNU11-3P-201ENST00000391111 133 ntBASIC1.87□□□□□ -2.11
TTC3P53804 RNU2-7P-201ENST00000410794 178 ntBASIC1.87□□□□□ -2.11
TTC3P53804 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.87□□□□□ -2.11
TTC3P53804 RNU7-95P-201ENST00000459222 64 ntBASIC1.87□□□□□ -2.11
TTC3P53804 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.87□□□□□ -2.11
TTC3P53804 RN7SKP19-201ENST00000516016 252 ntBASIC1.87□□□□□ -2.11
TTC3P53804 RNU6-1333P-201ENST00000516162 93 ntBASIC1.87□□□□□ -2.11
TTC3P53804 RNU2-56P-201ENST00000516826 190 ntBASIC1.87□□□□□ -2.11
TTC3P53804 RNU6-667P-201ENST00000517186 102 ntBASIC1.87□□□□□ -2.11
TTC3P53804 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.87□□□□□ -2.11
TTC3P53804 AL359821.1-201ENST00000605519 182 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms