Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC090142.3-201ENST00000519012 385 ntBASIC1.61□□□□□ -2.15
NEK3P51956 AL021707.8-201ENST00000609428 183 ntBASIC1.61□□□□□ -2.15
NEK3P51956 RNU6-1309P-201ENST00000363305 108 ntBASIC1.6□□□□□ -2.15
NEK3P51956 Y_RNA.133-201ENST00000363428 110 ntBASIC1.6□□□□□ -2.15
NEK3P51956 Y_RNA.352-201ENST00000365439 102 ntBASIC1.6□□□□□ -2.15
NEK3P51956 RNU6-211P-201ENST00000384047 107 ntBASIC1.6□□□□□ -2.15
NEK3P51956 Y_RNA.483-201ENST00000384380 101 ntBASIC1.6□□□□□ -2.15
NEK3P51956 RNU6-997P-201ENST00000384725 107 ntBASIC1.6□□□□□ -2.15
NEK3P51956 MIR320A-201ENST00000385302 82 ntBASIC1.6□□□□□ -2.15
NEK3P51956 MT-TW-201ENST00000387382 68 ntBASIC1.6□□□□□ -2.15
NEK3P51956 RNU6-1054P-201ENST00000411293 104 ntBASIC1.6□□□□□ -2.15
NEK3P51956 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.6□□□□□ -2.15
NEK3P51956 SNORD2.1-201ENST00000458762 69 ntBASIC1.6□□□□□ -2.15
NEK3P51956 RNU6-830P-201ENST00000516353 107 ntBASIC1.6□□□□□ -2.15
NEK3P51956 MIR4662B-201ENST00000579498 81 ntBASIC1.6□□□□□ -2.15
NEK3P51956 MIR4303-201ENST00000581299 66 ntBASIC1.6□□□□□ -2.15
NEK3P51956 BX248123.2-201ENST00000606318 124 ntBASIC1.6□□□□□ -2.15
NEK3P51956 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.6□□□□□ -2.15
NEK3P51956 Y_RNA.288-201ENST00000364854 92 ntBASIC1.59□□□□□ -2.15
NEK3P51956 SNORA8.3-201ENST00000384679 139 ntBASIC1.59□□□□□ -2.15
NEK3P51956 SNORA74.3-201ENST00000517108 154 ntBASIC1.59□□□□□ -2.15
NEK3P51956 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.59□□□□□ -2.15
NEK3P51956 AC006441.5-201ENST00000612680 209 ntBASIC1.59□□□□□ -2.15
NEK3P51956 uc_338.4-201ENST00000616635 176 ntBASIC1.59□□□□□ -2.15
NEK3P51956 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
NEK3P51956 RNU6-1138P-201ENST00000365359 106 ntBASIC1.58□□□□□ -2.16
NEK3P51956 MIR1278-201ENST00000408753 81 ntBASIC1.58□□□□□ -2.16
NEK3P51956 RNU1-98P-201ENST00000458992 160 ntBASIC1.58□□□□□ -2.16
NEK3P51956 SNORA31.4-201ENST00000516049 129 ntBASIC1.58□□□□□ -2.16
NEK3P51956 SNORD111.1-201ENST00000516421 86 ntBASIC1.58□□□□□ -2.16
NEK3P51956 RNU7-43P-201ENST00000516554 64 ntBASIC1.58□□□□□ -2.16
NEK3P51956 AC006006.1-201ENST00000603082 144 ntBASIC1.58□□□□□ -2.16
NEK3P51956 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
NEK3P51956 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
NEK3P51956 MIR378A-201ENST00000362177 66 ntBASIC1.57□□□□□ -2.16
NEK3P51956 RNU6-740P-201ENST00000364734 105 ntBASIC1.57□□□□□ -2.16
NEK3P51956 MIR517C-201ENST00000385103 95 ntBASIC1.57□□□□□ -2.16
NEK3P51956 SNORA67.6-201ENST00000391093 99 ntBASIC1.57□□□□□ -2.16
NEK3P51956 MIR548H3-201ENST00000408771 118 ntBASIC1.57□□□□□ -2.16
NEK3P51956 RNU4-62P-201ENST00000410125 130 ntBASIC1.57□□□□□ -2.16
NEK3P51956 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.57□□□□□ -2.16
NEK3P51956 SNRPGP14-201ENST00000435400 219 ntBASIC1.57□□□□□ -2.16
NEK3P51956 MIR4282-201ENST00000583613 67 ntBASIC1.57□□□□□ -2.16
NEK3P51956 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.57□□□□□ -2.16
NEK3P51956 RNU6-60P-201ENST00000364792 103 ntBASIC1.56□□□□□ -2.16
NEK3P51956 MIR516B2-201ENST00000385190 85 ntBASIC1.56□□□□□ -2.16
NEK3P51956 Y_RNA.590-201ENST00000410140 107 ntBASIC1.56□□□□□ -2.16
NEK3P51956 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.56□□□□□ -2.16
NEK3P51956 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.56□□□□□ -2.16
NEK3P51956 RNU1-42P-201ENST00000364033 160 ntBASIC1.55□□□□□ -2.16
NEK3P51956 RNU6-268P-201ENST00000364174 107 ntBASIC1.55□□□□□ -2.16
NEK3P51956 Y_RNA.396-201ENST00000383949 103 ntBASIC1.55□□□□□ -2.16
NEK3P51956 RNU6-383P-201ENST00000410864 94 ntBASIC1.55□□□□□ -2.16
NEK3P51956 AL645939.4-201ENST00000604495 135 ntBASIC1.55□□□□□ -2.16
NEK3P51956 AL512598.1-201ENST00000610158 273 ntBASIC1.55□□□□□ -2.16
NEK3P51956 MIR626-201ENST00000385032 94 ntBASIC1.54□□□□□ -2.16
NEK3P51956 MIR1323-201ENST00000408090 73 ntBASIC1.54□□□□□ -2.16
NEK3P51956 BTF3P4-201ENST00000418852 495 ntBASIC1.54□□□□□ -2.16
NEK3P51956 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.54□□□□□ -2.16
NEK3P51956 COX6CP14-201ENST00000469580 174 ntBASIC1.54□□□□□ -2.16
NEK3P51956 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.54□□□□□ -2.16
NEK3P51956 Pinc.1-201ENST00000616452 154 ntBASIC1.54□□□□□ -2.16
NEK3P51956 Y_RNA.117-201ENST00000363294 101 ntBASIC1.53□□□□□ -2.16
NEK3P51956 Y_RNA.338-201ENST00000365320 114 ntBASIC1.53□□□□□ -2.16
NEK3P51956 RNY3P5-201ENST00000384127 102 ntBASIC1.53□□□□□ -2.16
NEK3P51956 SNORD72-201ENST00000390994 80 ntBASIC1.53□□□□□ -2.16
NEK3P51956 AL603910.2-201ENST00000407268 136 ntBASIC1.53□□□□□ -2.16
NEK3P51956 AC245047.7-201ENST00000440265 293 ntBASIC1.53□□□□□ -2.16
NEK3P51956 SNORD127-201ENST00000458892 86 ntBASIC1.53□□□□□ -2.16
NEK3P51956 SNORD123-201ENST00000459473 70 ntBASIC1.53□□□□□ -2.16
NEK3P51956 AC108729.3-201ENST00000513484 108 ntBASIC1.53□□□□□ -2.16
NEK3P51956 SNORD77.4-201ENST00000516158 81 ntBASIC1.53□□□□□ -2.16
NEK3P51956 Y_RNA.679-201ENST00000516416 91 ntBASIC1.53□□□□□ -2.16
NEK3P51956 RNU7-149P-201ENST00000516739 59 ntBASIC1.53□□□□□ -2.16
NEK3P51956 SNORA31.24-201ENST00000517232 57 ntBASIC1.53□□□□□ -2.16
NEK3P51956 AC100767.1-201ENST00000528178 123 ntBASIC1.53□□□□□ -2.16
NEK3P51956 DNAJC19P9-201ENST00000555084 351 ntBASIC1.53□□□□□ -2.16
NEK3P51956 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.53□□□□□ -2.16
NEK3P51956 AL353621.2-201ENST00000605340 133 ntBASIC1.53□□□□□ -2.16
NEK3P51956 snoU13.31-201ENST00000607291 104 ntBASIC1.53□□□□□ -2.16
NEK3P51956 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
NEK3P51956 Y_RNA.304-201ENST00000365011 112 ntBASIC1.52□□□□□ -2.17
NEK3P51956 Y_RNA.562-201ENST00000384695 113 ntBASIC1.52□□□□□ -2.17
NEK3P51956 RNU6-1067P-201ENST00000384752 107 ntBASIC1.52□□□□□ -2.17
NEK3P51956 MIR520C-201ENST00000385005 87 ntBASIC1.52□□□□□ -2.17
NEK3P51956 SNORD12-201ENST00000391002 90 ntBASIC1.52□□□□□ -2.17
NEK3P51956 AL133373.1-201ENST00000497098 94 ntBASIC1.52□□□□□ -2.17
NEK3P51956 RNU6-947P-201ENST00000516264 106 ntBASIC1.52□□□□□ -2.17
NEK3P51956 SNORA18.7-201ENST00000516910 131 ntBASIC1.52□□□□□ -2.17
NEK3P51956 MIR4498-201ENST00000577599 66 ntBASIC1.52□□□□□ -2.17
NEK3P51956 AC012433.1-201ENST00000588916 398 ntBASIC1.52□□□□□ -2.17
NEK3P51956 BX284668.6-201ENST00000606899 438 ntBASIC1.52□□□□□ -2.17
NEK3P51956 AC099654.10-201ENST00000640395 161 ntBASIC1.52□□□□□ -2.17
NEK3P51956 AP000648.3-201ENST00000623539 4507 ntBASIC1.52□□□□□ -2.17
NEK3P51956 Y_RNA.122-201ENST00000363331 96 ntBASIC1.51□□□□□ -2.17
NEK3P51956 RNA5SP48-201ENST00000363969 126 ntBASIC1.51□□□□□ -2.17
NEK3P51956 RNU2-55P-201ENST00000411146 174 ntBASIC1.51□□□□□ -2.17
NEK3P51956 AP1B1P2-201ENST00000416196 106 ntBASIC1.51□□□□□ -2.17
NEK3P51956 AC245047.8-201ENST00000456455 284 ntBASIC1.51□□□□□ -2.17
NEK3P51956 RNU7-95P-201ENST00000459222 64 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 290.7 ms