Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SNORD28B-201ENST00000390993 75 ntBASIC0.1□□□□□ -2.39
COL18A1P39060 RNU6-1156P-201ENST00000410365 100 ntBASIC0.1□□□□□ -2.39
COL18A1P39060 MTCO3P10-201ENST00000455912 772 ntBASIC0.1□□□□□ -2.39
COL18A1P39060 RPS29P25-201ENST00000481709 171 ntBASIC0.1□□□□□ -2.39
COL18A1P39060 MIR3612-201ENST00000579753 87 ntBASIC0.1□□□□□ -2.39
COL18A1P39060 MIR548AX-201ENST00000580117 73 ntBASIC0.1□□□□□ -2.39
COL18A1P39060 RBM11P1-201ENST00000604951 799 ntBASIC0.1□□□□□ -2.39
COL18A1P39060 Y_RNA.473-201ENST00000384333 102 ntBASIC0.09□□□□□ -2.39
COL18A1P39060 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.39
COL18A1P39060 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.09□□□□□ -2.39
COL18A1P39060 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.09□□□□□ -2.39
COL18A1P39060 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.09□□□□□ -2.39
COL18A1P39060 MIR4804-201ENST00000581683 73 ntBASIC0.09□□□□□ -2.39
COL18A1P39060 AC087685.1-201ENST00000587507 141 ntBASIC0.09□□□□□ -2.39
COL18A1P39060 AC005176.2-201ENST00000596933 147 ntBASIC0.09□□□□□ -2.39
COL18A1P39060 AC103591.3-201ENST00000608684 209 ntBASIC0.09□□□□□ -2.39
COL18A1P39060 AC022079.1-201ENST00000621546 602 ntBASIC0.09□□□□□ -2.39
COL18A1P39060 MIR411-201ENST00000362239 96 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 Y_RNA.41-201ENST00000362646 102 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RNU6-99P-201ENST00000364721 107 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RNY1P8-201ENST00000383970 114 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 Y_RNA.446-201ENST00000384178 104 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 Y_RNA.453-201ENST00000384223 109 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 SNORA51.10-201ENST00000384418 136 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR570-201ENST00000384917 97 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RNU6-1148P-201ENST00000410992 104 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RNU6-847P-201ENST00000411115 108 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RNU6-1199P-201ENST00000411249 104 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MTCO2P27-201ENST00000420740 428 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RPS3AP52-201ENST00000435639 297 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.09□□□□□ -2.4
COL18A1P39060 CHEK2P4-201ENST00000450340 246 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 AC107399.1-201ENST00000451226 265 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.09□□□□□ -2.4
COL18A1P39060 RPL23AP54-201ENST00000495129 419 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RNU6-863P-201ENST00000515989 104 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RNU6-1012P-201ENST00000516606 109 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 RNU6-264P-201ENST00000517134 104 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 AC144568.1-201ENST00000520139 137 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 EIF1P4-201ENST00000572664 335 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR2681-201ENST00000581814 105 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR4264-201ENST00000583520 66 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR1244-1-201ENST00000612829 85 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR1244-3-201ENST00000635744 85 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR1244-2-201ENST00000636449 85 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR4315-1-201ENST00000636800 73 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR1244-4-202ENST00000636813 85 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR4315-2-201ENST00000640925 73 ntBASIC0.09□□□□□ -2.4
COL18A1P39060 MIR377-201ENST00000362145 69 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 MIR103A1-201ENST00000362165 78 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 RNU6-369P-201ENST00000362515 102 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 Y_RNA.341-201ENST00000365341 102 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 RNU6-20P-201ENST00000384106 107 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 Y_RNA.559-201ENST00000384686 107 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 Y_RNA.577-201ENST00000384794 101 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 MIR802-201ENST00000390235 94 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 MIR548K-201ENST00000408406 116 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 SNORA40.8-201ENST00000411034 126 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.08□□□□□ -2.4
COL18A1P39060 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.08□□□□□ -2.4
COL18A1P39060 AC011352.1-201ENST00000512300 793 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 RNU6-470P-201ENST00000515954 104 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 MIR548AO-201ENST00000579992 96 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 LARP7P1-201ENST00000605576 316 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 MIR4791-201ENST00000607666 84 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.08□□□□□ -2.4
COL18A1P39060 MTND1P7-201ENST00000632801 297 ntBASIC0.08□□□□□ -2.4
COL18A1P39060 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.08□□□□□ -2.4
COL18A1P39060 RNU6-601P-201ENST00000384540 107 ntBASIC0.07□□□□□ -2.4
COL18A1P39060 SNORD115-47-201ENST00000391226 86 ntBASIC0.07□□□□□ -2.4
COL18A1P39060 SNX3P1X-201ENST00000414887 175 ntBASIC0.07□□□□□ -2.4
COL18A1P39060 HMGN2P22-201ENST00000427588 175 ntBASIC0.07□□□□□ -2.4
COL18A1P39060 AC107297.1-201ENST00000459991 176 ntBASIC0.07□□□□□ -2.4
COL18A1P39060 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.07□□□□□ -2.4
COL18A1P39060 RNU6-155P-201ENST00000516347 100 ntBASIC0.07□□□□□ -2.4
COL18A1P39060 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC0.07□□□□□ -2.4
COL18A1P39060 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.07□□□□□ -2.4
COL18A1P39060 uc_338.16-201ENST00000621804 95 ntBASIC0.07□□□□□ -2.4
COL18A1P39060 RNU6-268P-201ENST00000364174 107 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 Y_RNA.230-201ENST00000364348 109 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 Y_RNA.404-201ENST00000383978 102 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 RNU6-1126P-201ENST00000384002 107 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 RNU6-767P-201ENST00000384132 107 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 Y_RNA.456-201ENST00000384232 111 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 RNY3P4-201ENST00000384428 101 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 SNORA75.4-201ENST00000391278 119 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 SNORD83.1-201ENST00000411362 77 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 PDCL2P1-201ENST00000419302 352 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 MTND3P10-201ENST00000450967 341 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 snoU13.21-201ENST00000459368 105 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 RPL7P42-201ENST00000481005 679 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 AC055872.1-201ENST00000570978 278 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 MIR4645-201ENST00000583158 77 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 MIR5188-201ENST00000583467 113 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.06□□□□□ -2.4
COL18A1P39060 Y_RNA.554-201ENST00000384672 102 ntBASIC0.06□□□□□ -2.4
COL18A1P39060 SNORD71-201ENST00000411292 86 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms