Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC136628.3-201ENST00000521868 290 ntBASIC0.79□□□□□ -2.28
HOXA9P31269 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.79□□□□□ -2.28
HOXA9P31269 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.79□□□□□ -2.28
HOXA9P31269 PRELID3BP2-201ENST00000605362 201 ntBASIC0.79□□□□□ -2.28
HOXA9P31269 SNORD113-5-201ENST00000607261 78 ntBASIC0.79□□□□□ -2.28
HOXA9P31269 MIR6513-201ENST00000621188 64 ntBASIC0.79□□□□□ -2.28
HOXA9P31269 MIR6835-201ENST00000621552 64 ntBASIC0.79□□□□□ -2.28
HOXA9P31269 AC090574.1-201ENST00000623186 233 ntBASIC0.79□□□□□ -2.28
HOXA9P31269 MIR6866-201ENST00000638146 69 ntBASIC0.79□□□□□ -2.28
HOXA9P31269 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.78□□□□□ -2.28
HOXA9P31269 RNU6-1084P-201ENST00000362498 107 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 Y_RNA.183-201ENST00000363882 113 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 Y_RNA.203-201ENST00000364106 102 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 Y_RNA.216-201ENST00000364205 93 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 RNU6-969P-201ENST00000383900 105 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 Y_RNA.460-201ENST00000384255 102 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 MIR452-201ENST00000385020 85 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 SNORA26.5-201ENST00000391215 123 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 Y_RNA.604-201ENST00000410574 102 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 LINC01399-202ENST00000458450 244 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.78□□□□□ -2.28
HOXA9P31269 RNU6-496P-201ENST00000516145 99 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 RNU7-116P-201ENST00000516940 62 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 AC127455.1-201ENST00000565496 145 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 MIR4653-201ENST00000585107 83 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 AL357312.1-201ENST00000603879 298 ntBASIC0.78□□□□□ -2.28
HOXA9P31269 AC008163.1-202ENST00000636004 2889 ntBASIC0.78□□□□□ -2.29
HOXA9P31269 AC134026.1-201ENST00000623249 2239 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 AC068700.1-201ENST00000565862 3754 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 Y_RNA.128-201ENST00000363391 112 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 RNU6-1209P-201ENST00000363655 107 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 SNORA63.7-201ENST00000365579 123 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 RNU6-131P-201ENST00000391144 107 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 MIR1278-201ENST00000408753 81 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 MIR1252-201ENST00000408861 65 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 AC024067.1-201ENST00000426199 223 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 AC002429.1-201ENST00000437672 148 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 POLR2KP2-201ENST00000438155 177 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 RNU7-141P-201ENST00000459304 62 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 AC098869.1-201ENST00000481627 292 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 NDUFA4P2-201ENST00000489989 244 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 RPL23AP54-201ENST00000495129 419 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.77□□□□□ -2.29
HOXA9P31269 SNORD79.1-201ENST00000516069 84 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 RNU6-191P-201ENST00000516295 94 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 Y_RNA.711-201ENST00000516993 102 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 DEFB108E-201ENST00000524692 240 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 MIR376A1-201ENST00000616574 68 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 MIR548AY-201ENST00000617669 107 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 AC134503.1-201ENST00000633048 54 ntBASIC0.77□□□□□ -2.29
HOXA9P31269 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
HOXA9P31269 Y_RNA.214-201ENST00000364201 112 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 Y_RNA.389-201ENST00000383924 113 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 SNORA72.4-201ENST00000384174 132 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 MIR508-201ENST00000384857 115 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 MIR216A-201ENST00000385063 110 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 MIR146A-201ENST00000385201 99 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
HOXA9P31269 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 SNORA36B-201ENST00000410438 131 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 Y_RNA.602-201ENST00000410535 92 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 ELOCP20-201ENST00000422460 345 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 U8.19-201ENST00000459095 133 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 PSMC1P5-201ENST00000512850 177 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 SNORA31.4-201ENST00000516049 129 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 RNU6-764P-201ENST00000516396 105 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 SNORA74.3-201ENST00000517108 154 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 RNU6-988P-201ENST00000519081 107 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 AP003716.2-201ENST00000528260 108 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 AC020661.2-201ENST00000560114 134 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 AC013244.2-201ENST00000603396 103 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 AL391903.3-201ENST00000612158 163 ntBASIC0.76□□□□□ -2.29
HOXA9P31269 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
HOXA9P31269 Y_RNA.26-201ENST00000362539 101 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 snoU2_19.2-201ENST00000363024 80 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 Y_RNA.136-201ENST00000363444 102 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 snoU2-30.1-201ENST00000365012 70 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 RNU6-806P-201ENST00000365147 105 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 MIR19B1-201ENST00000384829 87 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 MIR215-201ENST00000384858 110 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 MIR136-201ENST00000385207 82 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 MIR548P-201ENST00000408336 84 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 RNU6-101P-201ENST00000410323 104 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.75□□□□□ -2.29
HOXA9P31269 SNRPGP14-201ENST00000435400 219 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 RNU7-41P-201ENST00000515917 61 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 SNORD111.1-201ENST00000516421 86 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 SNORA18.7-201ENST00000516910 131 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 RNU6-1137P-201ENST00000517073 99 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 MIR3171-201ENST00000584270 74 ntBASIC0.75□□□□□ -2.29
HOXA9P31269 Y_RNA.158-201ENST00000363651 101 ntBASIC0.74□□□□□ -2.29
HOXA9P31269 RNU6-674P-201ENST00000363831 107 ntBASIC0.74□□□□□ -2.29
HOXA9P31269 Y_RNA.527-201ENST00000384573 102 ntBASIC0.74□□□□□ -2.29
HOXA9P31269 SNORA75.2-201ENST00000391138 150 ntBASIC0.74□□□□□ -2.29
HOXA9P31269 SNORA75.3-201ENST00000391231 150 ntBASIC0.74□□□□□ -2.29
HOXA9P31269 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.74□□□□□ -2.29
HOXA9P31269 AL606490.4-201ENST00000423117 127 ntBASIC0.74□□□□□ -2.29
HOXA9P31269 MTCO2P12-201ENST00000427426 682 ntBASIC0.74□□□□□ -2.29
HOXA9P31269 MTCO1P5-201ENST00000433573 344 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms