Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.69□□□□□ -2.14
HOXD3P31249 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
HOXD3P31249 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
HOXD3P31249 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HOXD3P31249 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
HOXD3P31249 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HOXD3P31249 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
HOXD3P31249 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
HOXD3P31249 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HOXD3P31249 RNU6-1082P-201ENST00000364574 107 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 RNU4-11P-201ENST00000365287 132 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 Y_RNA.337-201ENST00000365312 102 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 RNU6-1138P-201ENST00000365359 106 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 Y_RNA.521-201ENST00000384560 114 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 RNA5SP482-201ENST00000391269 118 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 U8.16-201ENST00000391279 133 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 AL023284.1-201ENST00000403956 276 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 RNU6-588P-201ENST00000410281 105 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 RN7SKP200-201ENST00000410564 320 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.68□□□□□ -2.14
HOXD3P31249 RPL23AP6-201ENST00000446637 472 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 RNA5SP57-201ENST00000459463 123 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 RNA5SP200-201ENST00000516360 103 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 SNORD45.4-201ENST00000516629 73 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.68□□□□□ -2.14
HOXD3P31249 MIR4762-201ENST00000585261 75 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 DNAJC19P2-201ENST00000593340 302 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 AC120024.3-201ENST00000603167 156 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 AL773524.1-201ENST00000614065 229 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 Y_RNA.778-201ENST00000620203 90 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 U1.36-201ENST00000620684 176 ntBASIC1.68□□□□□ -2.14
HOXD3P31249 AC005336.3-201ENST00000623833 2679 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 MIRLET7G-201ENST00000362280 84 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 Y_RNA.66-201ENST00000362862 102 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 Y_RNA.400-201ENST00000383963 111 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 RNU6-1031P-201ENST00000384773 107 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 SNORA79-201ENST00000408376 140 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.67□□□□□ -2.14
HOXD3P31249 AC069257.2-201ENST00000441819 155 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 AC114811.1-201ENST00000507207 168 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 RNA5SP168-201ENST00000516642 112 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 RNU7-28P-201ENST00000516759 62 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.67□□□□□ -2.14
HOXD3P31249 AL096840.1-201ENST00000603287 93 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.67□□□□□ -2.14
HOXD3P31249 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC1.67□□□□□ -2.14
HOXD3P31249 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
HOXD3P31249 Y_RNA.215-201ENST00000364204 112 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 RNU6-978P-201ENST00000364371 103 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 U8.5-201ENST00000364528 136 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 RNY1P5-201ENST00000383890 115 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 SNORD61-201ENST00000384252 73 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 SNORA20-201ENST00000384662 132 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
HOXD3P31249 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
HOXD3P31249 MIR676-201ENST00000390702 67 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 SNORA48.3-201ENST00000391081 134 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 RNU4-61P-201ENST00000411243 107 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 AC093850.1-201ENST00000454121 251 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 RPL23AP42-201ENST00000471152 471 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 RNU6-365P-201ENST00000517113 106 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.66□□□□□ -2.14
HOXD3P31249 MIR4299-201ENST00000577899 72 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 AC021506.2-201ENST00000612354 169 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 MIR6844-201ENST00000637122 62 ntBASIC1.66□□□□□ -2.14
HOXD3P31249 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
HOXD3P31249 AC007336.1-201ENST00000576365 3828 ntBASIC1.65□□□□□ -2.14
HOXD3P31249 Y_RNA.140-201ENST00000363474 103 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 SNORA1-201ENST00000384107 130 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 RNU6-163P-201ENST00000384396 106 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 RNA5SP212-201ENST00000391223 107 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 AL034345.1-201ENST00000407768 123 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 RNU7-34P-201ENST00000459394 64 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 AC099513.1-201ENST00000490423 301 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 RNA5SP458-201ENST00000516188 119 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 SNORA25.12-201ENST00000516202 82 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 RNA5SP153-201ENST00000516498 76 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 Y_RNA.714-201ENST00000517065 90 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 RNU6-1270P-201ENST00000517128 108 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 SNORA28-201ENST00000606769 126 ntBASIC1.65□□□□□ -2.15
HOXD3P31249 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
HOXD3P31249 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
HOXD3P31249 RNU6-268P-201ENST00000364174 107 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 snoU2-30.1-201ENST00000365012 70 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 Y_RNA.393-201ENST00000383936 102 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 RNU6-424P-201ENST00000384367 105 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 SNORD37.2-201ENST00000391075 66 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 HMGN2P19-201ENST00000425149 265 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 SNRPGP14-201ENST00000435400 219 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 HMGN2P23-201ENST00000456759 269 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 snoU13.27-201ENST00000459278 104 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.64□□□□□ -2.15
HOXD3P31249 RNU7-12P-201ENST00000516030 62 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 RNU6-693P-201ENST00000516134 107 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 RNU6-426P-201ENST00000516464 97 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 AC097639.2-201ENST00000603159 172 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 MTND1P7-201ENST00000632801 297 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 MIR219B-201ENST00000637023 88 ntBASIC1.64□□□□□ -2.15
HOXD3P31249 SNORD14E-201ENST00000364009 85 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms