Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
HOXD9P28356 CYCSP49-201ENST00000420810 319 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.94□□□□□ -2.1
HOXD9P28356 AC233266.1-201ENST00000454518 96 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 HMGN2P23-201ENST00000456759 269 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.94□□□□□ -2.1
HOXD9P28356 AC092991.1-201ENST00000477176 376 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 RPS27P21-201ENST00000486977 252 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 SNORA25.12-201ENST00000516202 82 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 AP002004.2-201ENST00000531656 154 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 AC242852.1-201ENST00000612151 96 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 AC244015.1-201ENST00000622301 99 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 AC091895.1-201ENST00000624494 256 ntBASIC1.94□□□□□ -2.1
HOXD9P28356 AC245060.5-201ENST00000610778 3293 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
HOXD9P28356 Y_RNA.251-201ENST00000364551 99 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 Y_RNA.267-201ENST00000364679 109 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 RNA5SP138-201ENST00000365098 114 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 SNORD37.2-201ENST00000391075 66 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 Y_RNA.621-201ENST00000411065 96 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 MTND4LP9-201ENST00000427694 174 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 SNRPGP10-201ENST00000432323 225 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 AC245047.4-201ENST00000433189 144 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 RNU6-237P-201ENST00000515985 71 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 RNA5SP272-201ENST00000516095 111 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 AC087685.1-201ENST00000587507 141 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 AC120024.3-201ENST00000603167 156 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 Pinc.1-201ENST00000616452 154 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 AP001340.1-201ENST00000624405 217 ntBASIC1.93□□□□□ -2.1
HOXD9P28356 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
HOXD9P28356 SNORA1B-201ENST00000362535 133 ntBASIC1.92□□□□□ -2.1
HOXD9P28356 Y_RNA.486-201ENST00000384398 107 ntBASIC1.92□□□□□ -2.1
HOXD9P28356 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.92□□□□□ -2.1
HOXD9P28356 RNU6-588P-201ENST00000410281 105 ntBASIC1.92□□□□□ -2.1
HOXD9P28356 RNU2-70P-201ENST00000410718 179 ntBASIC1.92□□□□□ -2.1
HOXD9P28356 AL158823.1-201ENST00000418441 478 ntBASIC1.92□□□□□ -2.1
HOXD9P28356 FTH1P12-201ENST00000432137 551 ntBASIC1.92□□□□□ -2.1
HOXD9P28356 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.92□□□□□ -2.1
HOXD9P28356 AC022217.4-201ENST00000604389 163 ntBASIC1.92□□□□□ -2.1
HOXD9P28356 U1.36-201ENST00000620684 176 ntBASIC1.92□□□□□ -2.1
HOXD9P28356 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXD9P28356 Y_RNA.91-201ENST00000363042 107 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 SNORA25.7-201ENST00000364375 127 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 Y_RNA.242-201ENST00000364473 110 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 RNU6-1082P-201ENST00000364574 107 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 RNU6-1081P-201ENST00000384537 107 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 MIR9-3-201ENST00000385084 90 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
HOXD9P28356 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
HOXD9P28356 AL356379.1-201ENST00000414105 126 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 AL049830.1-201ENST00000468034 425 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.91□□□□□ -2.1
HOXD9P28356 RPL23AP63-201ENST00000498752 471 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 Y_RNA.714-201ENST00000517065 90 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 RNU6-548P-201ENST00000517083 115 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.91□□□□□ -2.1
HOXD9P28356 MIR548AI-201ENST00000579940 88 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 MIR4762-201ENST00000585261 75 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 AL773524.1-201ENST00000614065 229 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 AL591926.4-201ENST00000616895 298 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.91□□□□□ -2.1
HOXD9P28356 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
HOXD9P28356 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
HOXD9P28356 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.91□□□□□ -2.1
HOXD9P28356 MIR126-201ENST00000362291 85 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 Y_RNA.66-201ENST00000362862 102 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 RNU6-1019P-201ENST00000364424 107 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 Y_RNA.420-201ENST00000384043 110 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 RNU6-22P-201ENST00000384355 107 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 MIR522-201ENST00000385071 87 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 RNA5SP501-201ENST00000410990 112 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 RPL23AP6-201ENST00000446637 472 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.9□□□□□ -2.11
HOXD9P28356 RPS29P11-201ENST00000496507 171 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 MRPS17P9-201ENST00000511924 393 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 RNU6-479P-201ENST00000516348 105 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 RNU6-62P-201ENST00000516526 102 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 RNU7-28P-201ENST00000516759 62 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 RNU6-365P-201ENST00000517113 106 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 AC008507.4-201ENST00000585464 127 ntBASIC1.9□□□□□ -2.11
HOXD9P28356 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
HOXD9P28356 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
HOXD9P28356 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
HOXD9P28356 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
HOXD9P28356 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.89□□□□□ -2.11
HOXD9P28356 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HOXD9P28356 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
HOXD9P28356 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HOXD9P28356 RNY1P11-201ENST00000363759 113 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 U8.5-201ENST00000364528 136 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 MIR539-201ENST00000365690 78 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 Y_RNA.542-201ENST00000384641 111 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 RNA5SP212-201ENST00000391223 107 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 AL606517.2-201ENST00000442855 241 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 RNA5SP233-201ENST00000459153 113 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 RNA5SP57-201ENST00000459463 123 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 AC079804.2-201ENST00000490376 200 ntBASIC1.89□□□□□ -2.11
HOXD9P28356 AC084364.2-201ENST00000546924 395 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 160.7 ms