Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL606490.4-201ENST00000423117 127 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 MRPS10P1-201ENST00000448483 130 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 OR9P1P-201ENST00000496431 281 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 RN7SKP295-201ENST00000517264 153 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 AL358944.1-201ENST00000528537 144 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 AC090049.2-201ENST00000550377 109 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 MIR3171-201ENST00000584270 74 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 SNORD113-5-201ENST00000607261 78 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 GHRLOS.1-201ENST00000610995 70 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 AL160413.1-201ENST00000622780 310 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 AC027335.2-201ENST00000624030 375 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 AC027279.3-201ENST00000625055 122 ntBASIC0.56□□□□□ -2.32
COL5A3P25940 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.56□□□□□ -2.32
COL5A3P25940 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
COL5A3P25940 Y_RNA.395-201ENST00000383945 109 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-937P-201ENST00000384325 106 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 Y_RNA.535-201ENST00000384612 99 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 Y_RNA.604-201ENST00000410574 102 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-733P-201ENST00000410759 104 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU2-61P-201ENST00000411069 191 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.55□□□□□ -2.32
COL5A3P25940 AL390729.2-201ENST00000416137 156 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AC114737.2-201ENST00000421583 173 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 PMCHL1-202ENST00000423102 261 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-764P-201ENST00000516396 105 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-1046P-201ENST00000516538 107 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU2-56P-201ENST00000516826 190 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU7-110P-201ENST00000516891 62 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 Y_RNA.714-201ENST00000517065 90 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 Y_RNA.715-201ENST00000517082 110 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.55□□□□□ -2.32
COL5A3P25940 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.55□□□□□ -2.32
COL5A3P25940 MIR3664-201ENST00000579074 99 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AC124312.5-201ENST00000604451 268 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AL513423.1-201ENST00000621695 132 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-806P-201ENST00000365147 105 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-1264P-201ENST00000383891 107 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-163P-201ENST00000384396 106 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-1248P-201ENST00000391096 64 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 MIR1302-11-201ENST00000408051 138 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 MIR1302-9-201ENST00000408365 138 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 MIR1302-10-201ENST00000408734 138 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-130P-201ENST00000411112 103 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.55□□□□□ -2.32
COL5A3P25940 ELOCP20-201ENST00000422460 345 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 SUMO1P2-201ENST00000452524 304 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 LINC01399-202ENST00000458450 244 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AC048334.1-201ENST00000477975 159 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AC010655.3-201ENST00000478818 450 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.55□□□□□ -2.32
COL5A3P25940 RNU7-115P-201ENST00000516433 55 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 RNU6-1116P-201ENST00000517269 99 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 AP003327.1-201ENST00000529684 127 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 MIR1302-2-201ENST00000607096 138 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.55□□□□□ -2.32
COL5A3P25940 MIR6079-201ENST00000635807 62 ntBASIC0.55□□□□□ -2.32
COL5A3P25940 Y_RNA.28-201ENST00000362554 111 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 Y_RNA.138-201ENST00000363462 102 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 RNU6-770P-201ENST00000363929 105 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 U8.7-201ENST00000364940 136 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 SNORD50B-201ENST00000364995 70 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 Y_RNA.389-201ENST00000383924 113 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 Y_RNA.527-201ENST00000384573 102 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 MIR660-201ENST00000385235 97 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 POLR2KP2-201ENST00000438155 177 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 RPL39P38-201ENST00000467018 153 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 RPL23AP54-201ENST00000495129 419 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.54□□□□□ -2.32
COL5A3P25940 RNU6-322P-201ENST00000516010 103 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 RNU6-1137P-201ENST00000517073 99 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 RNU6-1096P-201ENST00000517089 102 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
COL5A3P25940 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.54□□□□□ -2.32
COL5A3P25940 AC019288.1-201ENST00000557918 224 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.54□□□□□ -2.32
COL5A3P25940 MIR3145-201ENST00000580727 82 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 MIR4661-201ENST00000582720 75 ntBASIC0.54□□□□□ -2.32
COL5A3P25940 Y_RNA.26-201ENST00000362539 101 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 Y_RNA.148-201ENST00000363557 117 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 RNU4-76P-201ENST00000364509 141 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 SNORA63.7-201ENST00000365579 123 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 Y_RNA.460-201ENST00000384255 102 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 SNORD63-201ENST00000384262 68 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 Y_RNA.509-201ENST00000384506 99 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 RNU6-21P-201ENST00000384710 107 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 MIR136-201ENST00000385207 82 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
COL5A3P25940 SNORD115-46-201ENST00000390982 71 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 MIR873-201ENST00000401120 77 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 MIR1298-201ENST00000408783 112 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 RPL21P38-201ENST00000418090 167 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 AC024067.1-201ENST00000426199 223 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 SNRPGP12-201ENST00000449481 213 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 MRPS35P2-201ENST00000508242 191 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 SNORA31.4-201ENST00000516049 129 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 RNU6-1143P-201ENST00000516125 104 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 RNU6-165P-201ENST00000517170 99 ntBASIC0.53□□□□□ -2.32
COL5A3P25940 MIR5692C2-201ENST00000577959 77 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms