Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SNORA4.2-201ENST00000365313 147 ntBASIC3.09□□□□□ -1.91
RFX1P22670 RNU6-1144P-201ENST00000384247 104 ntBASIC3.09□□□□□ -1.91
RFX1P22670 RNU6-476P-201ENST00000384726 107 ntBASIC3.09□□□□□ -1.91
RFX1P22670 Y_RNA.630-201ENST00000411370 108 ntBASIC3.09□□□□□ -1.91
RFX1P22670 AL445646.1-201ENST00000431784 216 ntBASIC3.09□□□□□ -1.91
RFX1P22670 MIR3605-201ENST00000583214 100 ntBASIC3.09□□□□□ -1.91
RFX1P22670 MIR4506-201ENST00000584693 77 ntBASIC3.09□□□□□ -1.91
RFX1P22670 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.09□□□□□ -1.91
RFX1P22670 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
RFX1P22670 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
RFX1P22670 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
RFX1P22670 MIR26A1-201ENST00000362205 77 ntBASIC3.08□□□□□ -1.92
RFX1P22670 SNORD38C-201ENST00000384381 69 ntBASIC3.08□□□□□ -1.92
RFX1P22670 U8.16-201ENST00000391279 133 ntBASIC3.08□□□□□ -1.92
RFX1P22670 RNA5SP450-201ENST00000411206 102 ntBASIC3.08□□□□□ -1.92
RFX1P22670 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.08□□□□□ -1.92
RFX1P22670 CALM2P4-201ENST00000430810 426 ntBASIC3.08□□□□□ -1.92
RFX1P22670 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.08□□□□□ -1.92
RFX1P22670 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.08□□□□□ -1.92
RFX1P22670 RN7SKP19-201ENST00000516016 252 ntBASIC3.08□□□□□ -1.92
RFX1P22670 RNU6-781P-201ENST00000516377 101 ntBASIC3.08□□□□□ -1.92
RFX1P22670 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.08□□□□□ -1.92
RFX1P22670 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
RFX1P22670 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.07□□□□□ -1.92
RFX1P22670 RNU2-7P-201ENST00000410794 178 ntBASIC3.07□□□□□ -1.92
RFX1P22670 RNU6-938P-201ENST00000411285 103 ntBASIC3.07□□□□□ -1.92
RFX1P22670 UBL5P3-201ENST00000475112 231 ntBASIC3.07□□□□□ -1.92
RFX1P22670 RPL23AP63-201ENST00000498752 471 ntBASIC3.07□□□□□ -1.92
RFX1P22670 AC008413.1-201ENST00000511864 177 ntBASIC3.07□□□□□ -1.92
RFX1P22670 RNA5SP168-201ENST00000516642 112 ntBASIC3.07□□□□□ -1.92
RFX1P22670 RNA5SP437-201ENST00000517249 129 ntBASIC3.07□□□□□ -1.92
RFX1P22670 HMSD-204ENST00000526932 162 ntTSL 3 BASIC3.07□□□□□ -1.92
RFX1P22670 AC108081.1-201ENST00000604358 221 ntBASIC3.07□□□□□ -1.92
RFX1P22670 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
RFX1P22670 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.07□□□□□ -1.92
RFX1P22670 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.06□□□□□ -1.92
RFX1P22670 SNORA2.2-201ENST00000365473 135 ntBASIC3.06□□□□□ -1.92
RFX1P22670 RNU6-429P-201ENST00000384582 108 ntBASIC3.06□□□□□ -1.92
RFX1P22670 AL590004.2-201ENST00000404787 371 ntBASIC3.06□□□□□ -1.92
RFX1P22670 RNA5SP344-201ENST00000411081 104 ntBASIC3.06□□□□□ -1.92
RFX1P22670 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.06□□□□□ -1.92
RFX1P22670 RN7SKP132-201ENST00000516001 208 ntBASIC3.06□□□□□ -1.92
RFX1P22670 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
RFX1P22670 AC078899.2-201ENST00000595282 212 ntBASIC3.06□□□□□ -1.92
RFX1P22670 AC245884.12-201ENST00000615364 59 ntBASIC3.06□□□□□ -1.92
RFX1P22670 GS1-279B7.1-204ENST00000641809 378 ntBASIC3.06□□□□□ -1.92
RFX1P22670 MIR181B1-201ENST00000385240 110 ntBASIC3.05□□□□□ -1.92
RFX1P22670 MIRLET7F2-201ENST00000385277 83 ntBASIC3.05□□□□□ -1.92
RFX1P22670 RNU2-52P-201ENST00000410680 190 ntBASIC3.05□□□□□ -1.92
RFX1P22670 RNA5SP100-201ENST00000410903 110 ntBASIC3.05□□□□□ -1.92
RFX1P22670 RNA5SP59-201ENST00000410922 110 ntBASIC3.05□□□□□ -1.92
RFX1P22670 SNORD109B-201ENST00000458961 67 ntBASIC3.05□□□□□ -1.92
RFX1P22670 SNORD109A-201ENST00000459128 67 ntBASIC3.05□□□□□ -1.92
RFX1P22670 RNU7-193P-201ENST00000516723 65 ntBASIC3.05□□□□□ -1.92
RFX1P22670 SNORD36C-201ENST00000516733 66 ntBASIC3.05□□□□□ -1.92
RFX1P22670 5S_rRNA.3-201ENST00000517021 110 ntBASIC3.05□□□□□ -1.92
RFX1P22670 5S_rRNA.19-201ENST00000612131 110 ntBASIC3.05□□□□□ -1.92
RFX1P22670 AC015726.2-201ENST00000620112 122 ntBASIC3.05□□□□□ -1.92
RFX1P22670 AL513423.1-201ENST00000621695 132 ntBASIC3.05□□□□□ -1.92
RFX1P22670 5S_rRNA.18-201ENST00000621941 110 ntBASIC3.05□□□□□ -1.92
RFX1P22670 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.05□□□□□ -1.92
RFX1P22670 snoU13.27-201ENST00000459278 104 ntBASIC3.04□□□□□ -1.92
RFX1P22670 AC003982.1-202ENST00000469928 248 ntBASIC3.04□□□□□ -1.92
RFX1P22670 IGKV1-22-201ENST00000524313 326 ntBASIC3.04□□□□□ -1.92
RFX1P22670 PLD1-217ENST00000627725 174 ntTSL 5 BASIC3.04□□□□□ -1.92
RFX1P22670 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
RFX1P22670 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
RFX1P22670 Y_RNA.440-201ENST00000384120 114 ntBASIC3.03□□□□□ -1.92
RFX1P22670 SNORA70B-201ENST00000384210 135 ntBASIC3.03□□□□□ -1.92
RFX1P22670 RN7SKP123-201ENST00000410732 291 ntBASIC3.03□□□□□ -1.92
RFX1P22670 AC015922.2-201ENST00000435593 184 ntBASIC3.03□□□□□ -1.92
RFX1P22670 RPS26P48-201ENST00000491713 339 ntBASIC3.03□□□□□ -1.92
RFX1P22670 AP003484.1-201ENST00000530974 250 ntBASIC3.03□□□□□ -1.92
RFX1P22670 MTND5P34-201ENST00000568888 325 ntBASIC3.03□□□□□ -1.92
RFX1P22670 MIR4709-201ENST00000577272 72 ntBASIC3.03□□□□□ -1.92
RFX1P22670 MIR6129-201ENST00000616087 109 ntBASIC3.03□□□□□ -1.92
RFX1P22670 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC3.03□□□□□ -1.92
RFX1P22670 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.03□□□□□ -1.93
RFX1P22670 ICE2P2-201ENST00000483823 2787 ntBASIC3.02□□□□□ -1.93
RFX1P22670 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
RFX1P22670 RNU6-153P-201ENST00000364422 104 ntBASIC3.02□□□□□ -1.93
RFX1P22670 Y_RNA.346-201ENST00000365385 112 ntBASIC3.02□□□□□ -1.93
RFX1P22670 AC108938.1-201ENST00000451204 136 ntBASIC3.02□□□□□ -1.93
RFX1P22670 RNA5SP385-201ENST00000515947 110 ntBASIC3.02□□□□□ -1.93
RFX1P22670 RNU7-12P-201ENST00000516030 62 ntBASIC3.02□□□□□ -1.93
RFX1P22670 SNORD33.1-201ENST00000516213 88 ntBASIC3.02□□□□□ -1.93
RFX1P22670 RNU2-19P-201ENST00000517288 84 ntBASIC3.02□□□□□ -1.93
RFX1P22670 AL670379.3-201ENST00000605040 251 ntBASIC3.02□□□□□ -1.93
RFX1P22670 AC025166.1-201ENST00000612411 163 ntBASIC3.02□□□□□ -1.93
RFX1P22670 MIR7843-201ENST00000622274 79 ntBASIC3.02□□□□□ -1.93
RFX1P22670 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX1P22670 ZNF720P1-201ENST00000562403 1939 ntBASIC3.01□□□□□ -1.93
RFX1P22670 RNU6-360P-201ENST00000390944 104 ntBASIC3.01□□□□□ -1.93
RFX1P22670 AL627390.1-201ENST00000396055 340 ntBASIC3.01□□□□□ -1.93
RFX1P22670 AC021506.2-201ENST00000612354 169 ntBASIC3.01□□□□□ -1.93
RFX1P22670 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX1P22670 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.01□□□□□ -1.93
RFX1P22670 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
RFX1P22670 AL391516.1-201ENST00000554380 2449 ntBASIC3□□□□□ -1.93
RFX1P22670 RNU6-859P-201ENST00000362728 107 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms