Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SNORD114-2-201ENST00000363953 78 ntBASIC0.81□□□□□ -2.28
SDC1P18827 RNA5SP48-201ENST00000363969 126 ntBASIC0.81□□□□□ -2.28
SDC1P18827 RNU6-442P-201ENST00000383968 104 ntBASIC0.81□□□□□ -2.28
SDC1P18827 Y_RNA.569-201ENST00000384749 103 ntBASIC0.81□□□□□ -2.28
SDC1P18827 SNORD28B-201ENST00000390993 75 ntBASIC0.81□□□□□ -2.28
SDC1P18827 SNORD72-201ENST00000390994 80 ntBASIC0.81□□□□□ -2.28
SDC1P18827 AL603910.2-201ENST00000407268 136 ntBASIC0.81□□□□□ -2.28
SDC1P18827 MIR548P-201ENST00000408336 84 ntBASIC0.81□□□□□ -2.28
SDC1P18827 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.81□□□□□ -2.28
SDC1P18827 MRPS35P2-201ENST00000508242 191 ntBASIC0.81□□□□□ -2.28
SDC1P18827 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.81□□□□□ -2.28
SDC1P18827 MIR2681-201ENST00000581814 105 ntBASIC0.81□□□□□ -2.28
SDC1P18827 AL020996.3-201ENST00000606617 222 ntBASIC0.81□□□□□ -2.28
SDC1P18827 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
SDC1P18827 RNU6-268P-201ENST00000364174 107 ntBASIC0.8□□□□□ -2.28
SDC1P18827 Y_RNA.216-201ENST00000364205 93 ntBASIC0.8□□□□□ -2.28
SDC1P18827 SNORD114-24-201ENST00000365029 72 ntBASIC0.8□□□□□ -2.28
SDC1P18827 Y_RNA.380-201ENST00000365663 111 ntBASIC0.8□□□□□ -2.28
SDC1P18827 SNORD38C-201ENST00000384381 69 ntBASIC0.8□□□□□ -2.28
SDC1P18827 MIR200A-201ENST00000384875 90 ntBASIC0.8□□□□□ -2.28
SDC1P18827 MIR802-201ENST00000390235 94 ntBASIC0.8□□□□□ -2.28
SDC1P18827 ELOCP20-201ENST00000422460 345 ntBASIC0.8□□□□□ -2.28
SDC1P18827 MTCO2P12-201ENST00000427426 682 ntBASIC0.8□□□□□ -2.28
SDC1P18827 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.8□□□□□ -2.28
SDC1P18827 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.8□□□□□ -2.28
SDC1P18827 MIR548AR-201ENST00000582191 57 ntBASIC0.8□□□□□ -2.28
SDC1P18827 MIR4781-201ENST00000585250 76 ntBASIC0.8□□□□□ -2.28
SDC1P18827 AC068700.1-201ENST00000565862 3754 ntBASIC0.79□□□□□ -2.28
SDC1P18827 snoU2_19.2-201ENST00000363024 80 ntBASIC0.79□□□□□ -2.28
SDC1P18827 RNY1P10-201ENST00000363268 113 ntBASIC0.79□□□□□ -2.28
SDC1P18827 RNU6-899P-201ENST00000363947 107 ntBASIC0.79□□□□□ -2.28
SDC1P18827 Y_RNA.214-201ENST00000364201 112 ntBASIC0.79□□□□□ -2.28
SDC1P18827 RNU6-290P-201ENST00000365212 101 ntBASIC0.79□□□□□ -2.28
SDC1P18827 Y_RNA.330-201ENST00000365230 109 ntBASIC0.79□□□□□ -2.28
SDC1P18827 Y_RNA.527-201ENST00000384573 102 ntBASIC0.79□□□□□ -2.28
SDC1P18827 MIR215-201ENST00000384858 110 ntBASIC0.79□□□□□ -2.28
SDC1P18827 POLR2J4-204ENST00000418424 324 ntBASIC0.79□□□□□ -2.28
SDC1P18827 Y_RNA.637-201ENST00000459424 114 ntBASIC0.79□□□□□ -2.28
SDC1P18827 RPL39P28-201ENST00000465655 155 ntBASIC0.79□□□□□ -2.28
SDC1P18827 AC098869.1-201ENST00000481627 292 ntBASIC0.79□□□□□ -2.28
SDC1P18827 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.79□□□□□ -2.28
SDC1P18827 RNU6-830P-201ENST00000516353 107 ntBASIC0.79□□□□□ -2.28
SDC1P18827 SNORA40.15-201ENST00000516884 107 ntBASIC0.79□□□□□ -2.28
SDC1P18827 AC131281.1-201ENST00000522984 164 ntBASIC0.79□□□□□ -2.28
SDC1P18827 AC020661.2-201ENST00000560114 134 ntBASIC0.79□□□□□ -2.28
SDC1P18827 MIR4698-201ENST00000577795 80 ntBASIC0.79□□□□□ -2.28
SDC1P18827 AC113195.1-201ENST00000579952 141 ntBASIC0.79□□□□□ -2.28
SDC1P18827 MIR4661-201ENST00000582720 75 ntBASIC0.79□□□□□ -2.28
SDC1P18827 MIR3171-201ENST00000584270 74 ntBASIC0.79□□□□□ -2.28
SDC1P18827 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.79□□□□□ -2.28
SDC1P18827 SEPT14P17-201ENST00000617978 177 ntBASIC0.79□□□□□ -2.28
SDC1P18827 AC008133.2-201ENST00000624540 351 ntBASIC0.79□□□□□ -2.28
SDC1P18827 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.79□□□□□ -2.28
SDC1P18827 Y_RNA.26-201ENST00000362539 101 ntBASIC0.78□□□□□ -2.28
SDC1P18827 Y_RNA.158-201ENST00000363651 101 ntBASIC0.78□□□□□ -2.28
SDC1P18827 RNU6-806P-201ENST00000365147 105 ntBASIC0.78□□□□□ -2.28
SDC1P18827 Y_RNA.455-201ENST00000384230 98 ntBASIC0.78□□□□□ -2.28
SDC1P18827 Y_RNA.541-201ENST00000384640 113 ntBASIC0.78□□□□□ -2.28
SDC1P18827 MIR942-201ENST00000401111 86 ntBASIC0.78□□□□□ -2.28
SDC1P18827 RPL21P38-201ENST00000418090 167 ntBASIC0.78□□□□□ -2.28
SDC1P18827 PDCD5P2-201ENST00000507570 312 ntBASIC0.78□□□□□ -2.28
SDC1P18827 RNU6-351P-201ENST00000516097 100 ntBASIC0.78□□□□□ -2.28
SDC1P18827 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.78□□□□□ -2.28
SDC1P18827 Pinc.1-201ENST00000616452 154 ntBASIC0.78□□□□□ -2.28
SDC1P18827 SNORD114-27-201ENST00000363766 70 ntBASIC0.77□□□□□ -2.29
SDC1P18827 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.77□□□□□ -2.29
SDC1P18827 MIR1302-7-201ENST00000408841 72 ntBASIC0.77□□□□□ -2.29
SDC1P18827 Y_RNA.604-201ENST00000410574 102 ntBASIC0.77□□□□□ -2.29
SDC1P18827 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.77□□□□□ -2.29
SDC1P18827 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.77□□□□□ -2.29
SDC1P18827 AC023827.1-201ENST00000569247 97 ntBASIC0.77□□□□□ -2.29
SDC1P18827 MIR3973-201ENST00000579824 107 ntBASIC0.77□□□□□ -2.29
SDC1P18827 MIR4680-201ENST00000580906 66 ntBASIC0.77□□□□□ -2.29
SDC1P18827 AC131055.1-201ENST00000584626 316 ntBASIC0.77□□□□□ -2.29
SDC1P18827 AC013244.2-201ENST00000603396 103 ntBASIC0.77□□□□□ -2.29
SDC1P18827 AL355297.3-201ENST00000604082 446 ntBASIC0.77□□□□□ -2.29
SDC1P18827 MIR6857-201ENST00000613267 93 ntBASIC0.77□□□□□ -2.29
SDC1P18827 MIR4251-201ENST00000635819 61 ntBASIC0.77□□□□□ -2.29
SDC1P18827 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
SDC1P18827 Y_RNA.19-201ENST00000362462 99 ntBASIC0.76□□□□□ -2.29
SDC1P18827 RNU6-1272P-201ENST00000362776 107 ntBASIC0.76□□□□□ -2.29
SDC1P18827 RNU6-1205P-201ENST00000363625 106 ntBASIC0.76□□□□□ -2.29
SDC1P18827 RNU6-770P-201ENST00000363929 105 ntBASIC0.76□□□□□ -2.29
SDC1P18827 Y_RNA.210-201ENST00000364161 110 ntBASIC0.76□□□□□ -2.29
SDC1P18827 Y_RNA.276-201ENST00000364732 109 ntBASIC0.76□□□□□ -2.29
SDC1P18827 RNU1-36P-201ENST00000365130 165 ntBASIC0.76□□□□□ -2.29
SDC1P18827 MIR570-201ENST00000384917 97 ntBASIC0.76□□□□□ -2.29
SDC1P18827 RNU6-383P-201ENST00000410864 94 ntBASIC0.76□□□□□ -2.29
SDC1P18827 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.76□□□□□ -2.29
SDC1P18827 AL392103.1-201ENST00000447000 198 ntBASIC0.76□□□□□ -2.29
SDC1P18827 AC091959.1-201ENST00000495857 238 ntBASIC0.76□□□□□ -2.29
SDC1P18827 RNY3P15-201ENST00000516297 97 ntBASIC0.76□□□□□ -2.29
SDC1P18827 RNU2-31P-201ENST00000516954 155 ntBASIC0.76□□□□□ -2.29
SDC1P18827 RNU6-1137P-201ENST00000517073 99 ntBASIC0.76□□□□□ -2.29
SDC1P18827 AC006441.5-201ENST00000612680 209 ntBASIC0.76□□□□□ -2.29
SDC1P18827 AC013791.1-201ENST00000616619 62 ntBASIC0.76□□□□□ -2.29
SDC1P18827 AC015726.2-201ENST00000620112 122 ntBASIC0.76□□□□□ -2.29
SDC1P18827 RNU6-797P-201ENST00000363101 109 ntBASIC0.75□□□□□ -2.29
SDC1P18827 U8.17-201ENST00000391292 132 ntBASIC0.75□□□□□ -2.29
SDC1P18827 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms