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Protein–RNA interactions for Protein: O75056
SDC3, Syndecan-3, human
Predictions only
Length
442 aa
.
Download Table
Protein
RNA
Prediction (catRAPID)
Interaction (ENCODE eCLIP)
Gene
UniProt Accession
Transcript Symbol
Ensembl Transcript ID
Length
Transcript Status
Prediction Score
Prediction z-Score
p-Value
Fold Change
SDC3
O75056
SNORA75.2-201
ENST00000391138
150 nt
BASIC
0.85
□□□□□ -2.27
SDC3
O75056
Y_RNA.645-201
ENST00000391229
102 nt
BASIC
0.85
□□□□□ -2.27
SDC3
O75056
SNORA75.3-201
ENST00000391231
150 nt
BASIC
0.85
□□□□□ -2.27
SDC3
O75056
PMCHL1-202
ENST00000423102
261 nt
BASIC
0.85
□□□□□ -2.27
SDC3
O75056
RNU7-90P-201
ENST00000459216
62 nt
BASIC
0.85
□□□□□ -2.27
SDC3
O75056
PDCD5P2-201
ENST00000507570
312 nt
BASIC
0.85
□□□□□ -2.27
SDC3
O75056
MIR4764-201
ENST00000580680
88 nt
BASIC
0.85
□□□□□ -2.27
SDC3
O75056
MIR2681-201
ENST00000581814
105 nt
BASIC
0.85
□□□□□ -2.27
SDC3
O75056
JPX_2.1-201
ENST00000614161
69 nt
BASIC
0.85
□□□□□ -2.27
SDC3
O75056
Y_RNA.36-201
ENST00000362602
112 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
RNU4-80P-201
ENST00000363200
141 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
Y_RNA.136-201
ENST00000363444
102 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
SNORD114-26-201
ENST00000363543
72 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
RNU6-1209P-201
ENST00000363655
107 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
RNU6-801P-201
ENST00000364087
105 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
RNU1-36P-201
ENST00000365130
165 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
Y_RNA.445-201
ENST00000384168
102 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
SNORA72.4-201
ENST00000384174
132 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
SNORD115-46-201
ENST00000390982
71 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
MIR942-201
ENST00000401111
86 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
RNU7-141P-201
ENST00000459304
62 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
SNORD123-201
ENST00000459473
70 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
RNU6-830P-201
ENST00000516353
107 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
RNU6-1046P-201
ENST00000516538
107 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
SNORA18.7-201
ENST00000516910
131 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
Y_RNA.715-201
ENST00000517082
110 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
MIR4714-201
ENST00000580728
77 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
AC124312.5-201
ENST00000604451
268 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
AC090574.1-201
ENST00000623186
233 nt
BASIC
0.84
□□□□□ -2.27
SDC3
O75056
Y_RNA.31-201
ENST00000362574
102 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
RNA5SP48-201
ENST00000363969
126 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
RNU1-133P-201
ENST00000364867
167 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
RNU6-823P-201
ENST00000391042
103 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
RNU6ATAC19P-201
ENST00000408096
110 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
SNORA36B-201
ENST00000410438
131 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
SNRPGP14-201
ENST00000435400
219 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
RNU6-437P-201
ENST00000459408
95 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
NDUFA4P2-201
ENST00000489989
244 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
RNU7-41P-201
ENST00000515917
61 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
RNU6-191P-201
ENST00000516295
94 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
Y_RNA.721-201
ENST00000517207
102 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
AC024382.1-201
ENST00000520224
292 nt
TSL 3
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
AC126177.2-201
ENST00000552154
452 nt
TSL 3
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
MIR4300-201
ENST00000581016
96 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
FAM71BP1-201
ENST00000604431
523 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
MIR376A1-201
ENST00000616574
68 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
AL160413.1-201
ENST00000622780
310 nt
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
IST1-227
ENST00000626438
126 nt
TSL 5
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
C9orf84-205
ENST00000394779
5060 nt
APPRIS ALT2
TSL 2
BASIC
0.83
□□□□□ -2.28
SDC3
O75056
Y_RNA.28-201
ENST00000362554
111 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
SNORD113-8-201
ENST00000363497
74 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
Y_RNA.148-201
ENST00000363557
117 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
RNU6-442P-201
ENST00000383968
104 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
Y_RNA.418-201
ENST00000384029
102 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
MIR1252-201
ENST00000408861
65 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
RNU2-14P-201
ENST00000411053
191 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
RNU6-496P-201
ENST00000516145
99 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
AC008507.4-201
ENST00000585464
127 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
AC108706.1-201
ENST00000611053
297 nt
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
SLC8A1-AS1-230
ENST00000627538
212 nt
TSL 5
BASIC
0.82
□□□□□ -2.28
SDC3
O75056
C9orf84-204
ENST00000394777
4955 nt
APPRIS ALT2
TSL 1 (best)
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
SNORD38C-201
ENST00000384381
69 nt
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
RNU6-308P-201
ENST00000390957
107 nt
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
MIR1185-1-201
ENST00000408598
86 nt
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
HSPE1P25-201
ENST00000455484
251 nt
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
RN7SKP164-201
ENST00000516138
266 nt
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
RNU6-897P-201
ENST00000517135
105 nt
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
AC092071.1-201
ENST00000597260
549 nt
TSL 5
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
AC104695.3-201
ENST00000604052
296 nt
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
RAC1P9-201
ENST00000604990
392 nt
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
SEPT14P17-201
ENST00000617978
177 nt
BASIC
0.81
□□□□□ -2.28
SDC3
O75056
MIR103A2-201
ENST00000362154
78 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
RNU4-90P-201
ENST00000362773
141 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
Y_RNA.242-201
ENST00000364473
110 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
Y_RNA.813-201
ENST00000364639
102 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
RNU6-474P-201
ENST00000384243
107 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
Y_RNA.460-201
ENST00000384255
102 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
SNORA26.5-201
ENST00000391215
123 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
RNU2-64P-201
ENST00000411315
191 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
RPS3AP1-201
ENST00000413190
320 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
SNORD11-201
ENST00000459124
84 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
Y_RNA.631-201
ENST00000459607
101 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
RNU6-1007P-201
ENST00000516586
107 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
RNU11-2P-201
ENST00000516898
142 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
AC005357.1-201
ENST00000588399
301 nt
BASIC
0.8
□□□□□ -2.28
SDC3
O75056
Y_RNA.128-201
ENST00000363391
112 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
RNA5SP325-201
ENST00000363756
130 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
RNU6-899P-201
ENST00000363947
107 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
RNU6-1048P-201
ENST00000364054
107 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
RNU6-268P-201
ENST00000364174
107 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
Y_RNA.380-201
ENST00000365663
111 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
Y_RNA.393-201
ENST00000383936
102 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
RNU6-144P-201
ENST00000383951
107 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
Y_RNA.581-201
ENST00000391017
97 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
RNU6ATAC27P-201
ENST00000408289
119 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
RNU6-101P-201
ENST00000410323
104 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
AC073127.1-201
ENST00000447336
333 nt
TSL 3
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
PSMC1P5-201
ENST00000512850
177 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
RNU6-764P-201
ENST00000516396
105 nt
BASIC
0.79
□□□□□ -2.28
SDC3
O75056
RNU6-197P-201
ENST00000516680
100 nt
BASIC
0.79
□□□□□ -2.28
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