Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SNORA75.2-201ENST00000391138 150 ntBASIC0.85□□□□□ -2.27
SDC3O75056 Y_RNA.645-201ENST00000391229 102 ntBASIC0.85□□□□□ -2.27
SDC3O75056 SNORA75.3-201ENST00000391231 150 ntBASIC0.85□□□□□ -2.27
SDC3O75056 PMCHL1-202ENST00000423102 261 ntBASIC0.85□□□□□ -2.27
SDC3O75056 RNU7-90P-201ENST00000459216 62 ntBASIC0.85□□□□□ -2.27
SDC3O75056 PDCD5P2-201ENST00000507570 312 ntBASIC0.85□□□□□ -2.27
SDC3O75056 MIR4764-201ENST00000580680 88 ntBASIC0.85□□□□□ -2.27
SDC3O75056 MIR2681-201ENST00000581814 105 ntBASIC0.85□□□□□ -2.27
SDC3O75056 JPX_2.1-201ENST00000614161 69 ntBASIC0.85□□□□□ -2.27
SDC3O75056 Y_RNA.36-201ENST00000362602 112 ntBASIC0.84□□□□□ -2.27
SDC3O75056 RNU4-80P-201ENST00000363200 141 ntBASIC0.84□□□□□ -2.27
SDC3O75056 Y_RNA.136-201ENST00000363444 102 ntBASIC0.84□□□□□ -2.27
SDC3O75056 SNORD114-26-201ENST00000363543 72 ntBASIC0.84□□□□□ -2.27
SDC3O75056 RNU6-1209P-201ENST00000363655 107 ntBASIC0.84□□□□□ -2.27
SDC3O75056 RNU6-801P-201ENST00000364087 105 ntBASIC0.84□□□□□ -2.27
SDC3O75056 RNU1-36P-201ENST00000365130 165 ntBASIC0.84□□□□□ -2.27
SDC3O75056 Y_RNA.445-201ENST00000384168 102 ntBASIC0.84□□□□□ -2.27
SDC3O75056 SNORA72.4-201ENST00000384174 132 ntBASIC0.84□□□□□ -2.27
SDC3O75056 SNORD115-46-201ENST00000390982 71 ntBASIC0.84□□□□□ -2.27
SDC3O75056 MIR942-201ENST00000401111 86 ntBASIC0.84□□□□□ -2.27
SDC3O75056 RNU7-141P-201ENST00000459304 62 ntBASIC0.84□□□□□ -2.27
SDC3O75056 SNORD123-201ENST00000459473 70 ntBASIC0.84□□□□□ -2.27
SDC3O75056 RNU6-830P-201ENST00000516353 107 ntBASIC0.84□□□□□ -2.27
SDC3O75056 RNU6-1046P-201ENST00000516538 107 ntBASIC0.84□□□□□ -2.27
SDC3O75056 SNORA18.7-201ENST00000516910 131 ntBASIC0.84□□□□□ -2.27
SDC3O75056 Y_RNA.715-201ENST00000517082 110 ntBASIC0.84□□□□□ -2.27
SDC3O75056 MIR4714-201ENST00000580728 77 ntBASIC0.84□□□□□ -2.27
SDC3O75056 AC124312.5-201ENST00000604451 268 ntBASIC0.84□□□□□ -2.27
SDC3O75056 AC090574.1-201ENST00000623186 233 ntBASIC0.84□□□□□ -2.27
SDC3O75056 Y_RNA.31-201ENST00000362574 102 ntBASIC0.83□□□□□ -2.28
SDC3O75056 RNA5SP48-201ENST00000363969 126 ntBASIC0.83□□□□□ -2.28
SDC3O75056 RNU1-133P-201ENST00000364867 167 ntBASIC0.83□□□□□ -2.28
SDC3O75056 RNU6-823P-201ENST00000391042 103 ntBASIC0.83□□□□□ -2.28
SDC3O75056 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.83□□□□□ -2.28
SDC3O75056 SNORA36B-201ENST00000410438 131 ntBASIC0.83□□□□□ -2.28
SDC3O75056 SNRPGP14-201ENST00000435400 219 ntBASIC0.83□□□□□ -2.28
SDC3O75056 RNU6-437P-201ENST00000459408 95 ntBASIC0.83□□□□□ -2.28
SDC3O75056 NDUFA4P2-201ENST00000489989 244 ntBASIC0.83□□□□□ -2.28
SDC3O75056 RNU7-41P-201ENST00000515917 61 ntBASIC0.83□□□□□ -2.28
SDC3O75056 RNU6-191P-201ENST00000516295 94 ntBASIC0.83□□□□□ -2.28
SDC3O75056 Y_RNA.721-201ENST00000517207 102 ntBASIC0.83□□□□□ -2.28
SDC3O75056 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.83□□□□□ -2.28
SDC3O75056 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.83□□□□□ -2.28
SDC3O75056 MIR4300-201ENST00000581016 96 ntBASIC0.83□□□□□ -2.28
SDC3O75056 FAM71BP1-201ENST00000604431 523 ntBASIC0.83□□□□□ -2.28
SDC3O75056 MIR376A1-201ENST00000616574 68 ntBASIC0.83□□□□□ -2.28
SDC3O75056 AL160413.1-201ENST00000622780 310 ntBASIC0.83□□□□□ -2.28
SDC3O75056 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.83□□□□□ -2.28
SDC3O75056 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.83□□□□□ -2.28
SDC3O75056 Y_RNA.28-201ENST00000362554 111 ntBASIC0.82□□□□□ -2.28
SDC3O75056 SNORD113-8-201ENST00000363497 74 ntBASIC0.82□□□□□ -2.28
SDC3O75056 Y_RNA.148-201ENST00000363557 117 ntBASIC0.82□□□□□ -2.28
SDC3O75056 RNU6-442P-201ENST00000383968 104 ntBASIC0.82□□□□□ -2.28
SDC3O75056 Y_RNA.418-201ENST00000384029 102 ntBASIC0.82□□□□□ -2.28
SDC3O75056 MIR1252-201ENST00000408861 65 ntBASIC0.82□□□□□ -2.28
SDC3O75056 RNU2-14P-201ENST00000411053 191 ntBASIC0.82□□□□□ -2.28
SDC3O75056 RNU6-496P-201ENST00000516145 99 ntBASIC0.82□□□□□ -2.28
SDC3O75056 AC008507.4-201ENST00000585464 127 ntBASIC0.82□□□□□ -2.28
SDC3O75056 AC108706.1-201ENST00000611053 297 ntBASIC0.82□□□□□ -2.28
SDC3O75056 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.82□□□□□ -2.28
SDC3O75056 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.81□□□□□ -2.28
SDC3O75056 SNORD38C-201ENST00000384381 69 ntBASIC0.81□□□□□ -2.28
SDC3O75056 RNU6-308P-201ENST00000390957 107 ntBASIC0.81□□□□□ -2.28
SDC3O75056 MIR1185-1-201ENST00000408598 86 ntBASIC0.81□□□□□ -2.28
SDC3O75056 HSPE1P25-201ENST00000455484 251 ntBASIC0.81□□□□□ -2.28
SDC3O75056 RN7SKP164-201ENST00000516138 266 ntBASIC0.81□□□□□ -2.28
SDC3O75056 RNU6-897P-201ENST00000517135 105 ntBASIC0.81□□□□□ -2.28
SDC3O75056 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.81□□□□□ -2.28
SDC3O75056 AC104695.3-201ENST00000604052 296 ntBASIC0.81□□□□□ -2.28
SDC3O75056 RAC1P9-201ENST00000604990 392 ntBASIC0.81□□□□□ -2.28
SDC3O75056 SEPT14P17-201ENST00000617978 177 ntBASIC0.81□□□□□ -2.28
SDC3O75056 MIR103A2-201ENST00000362154 78 ntBASIC0.8□□□□□ -2.28
SDC3O75056 RNU4-90P-201ENST00000362773 141 ntBASIC0.8□□□□□ -2.28
SDC3O75056 Y_RNA.242-201ENST00000364473 110 ntBASIC0.8□□□□□ -2.28
SDC3O75056 Y_RNA.813-201ENST00000364639 102 ntBASIC0.8□□□□□ -2.28
SDC3O75056 RNU6-474P-201ENST00000384243 107 ntBASIC0.8□□□□□ -2.28
SDC3O75056 Y_RNA.460-201ENST00000384255 102 ntBASIC0.8□□□□□ -2.28
SDC3O75056 SNORA26.5-201ENST00000391215 123 ntBASIC0.8□□□□□ -2.28
SDC3O75056 RNU2-64P-201ENST00000411315 191 ntBASIC0.8□□□□□ -2.28
SDC3O75056 RPS3AP1-201ENST00000413190 320 ntBASIC0.8□□□□□ -2.28
SDC3O75056 SNORD11-201ENST00000459124 84 ntBASIC0.8□□□□□ -2.28
SDC3O75056 Y_RNA.631-201ENST00000459607 101 ntBASIC0.8□□□□□ -2.28
SDC3O75056 RNU6-1007P-201ENST00000516586 107 ntBASIC0.8□□□□□ -2.28
SDC3O75056 RNU11-2P-201ENST00000516898 142 ntBASIC0.8□□□□□ -2.28
SDC3O75056 AC005357.1-201ENST00000588399 301 ntBASIC0.8□□□□□ -2.28
SDC3O75056 Y_RNA.128-201ENST00000363391 112 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNA5SP325-201ENST00000363756 130 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNU6-899P-201ENST00000363947 107 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNU6-1048P-201ENST00000364054 107 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNU6-268P-201ENST00000364174 107 ntBASIC0.79□□□□□ -2.28
SDC3O75056 Y_RNA.380-201ENST00000365663 111 ntBASIC0.79□□□□□ -2.28
SDC3O75056 Y_RNA.393-201ENST00000383936 102 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNU6-144P-201ENST00000383951 107 ntBASIC0.79□□□□□ -2.28
SDC3O75056 Y_RNA.581-201ENST00000391017 97 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNU6-101P-201ENST00000410323 104 ntBASIC0.79□□□□□ -2.28
SDC3O75056 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.79□□□□□ -2.28
SDC3O75056 PSMC1P5-201ENST00000512850 177 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNU6-764P-201ENST00000516396 105 ntBASIC0.79□□□□□ -2.28
SDC3O75056 RNU6-197P-201ENST00000516680 100 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 182.2 ms