Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 SNORA18.7-201ENST00000516910 131 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.17□□□□□ -2.22
VPS28Q9UK41 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.17□□□□□ -2.22
VPS28Q9UK41 MIR3192-201ENST00000584920 77 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 RAC1P9-201ENST00000604990 392 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 RNU4-90P-201ENST00000362773 141 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 Y_RNA.128-201ENST00000363391 112 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 RNU6-450P-201ENST00000364654 107 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 RNU6-474P-201ENST00000384243 107 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 MIR520C-201ENST00000385005 87 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 SNORA36B-201ENST00000410438 131 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 AC002429.1-201ENST00000437672 148 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.16□□□□□ -2.22
VPS28Q9UK41 RPS29P28-201ENST00000446439 141 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 RNU7-43P-201ENST00000516554 64 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 RNU6-897P-201ENST00000517135 105 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 AC104695.3-201ENST00000604052 296 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 PRELID3BP2-201ENST00000605362 201 ntBASIC1.16□□□□□ -2.22
VPS28Q9UK41 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.16□□□□□ -2.22
VPS28Q9UK41 Y_RNA.61-201ENST00000362835 102 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 Y_RNA.136-201ENST00000363444 102 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 RNU6-1209P-201ENST00000363655 107 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 Y_RNA.796-201ENST00000364268 102 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 Y_RNA.799-201ENST00000364992 102 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 RNU6-442P-201ENST00000383968 104 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 SNORD38C-201ENST00000384381 69 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 Y_RNA.535-201ENST00000384612 99 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 SNORD115-46-201ENST00000390982 71 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 MIR1285-1-201ENST00000408593 84 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 Y_RNA.602-201ENST00000410535 92 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 COX6CP14-201ENST00000469580 174 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.15□□□□□ -2.23
VPS28Q9UK41 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.15□□□□□ -2.23
VPS28Q9UK41 MIR4295-201ENST00000585286 85 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 AC012676.2-201ENST00000619258 186 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 AC134503.1-201ENST00000633048 54 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 AL391516.1-201ENST00000554380 2449 ntBASIC1.15□□□□□ -2.23
VPS28Q9UK41 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
VPS28Q9UK41 MTND4P29-201ENST00000503122 1372 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 RNU6-674P-201ENST00000363831 107 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 RNU6-801P-201ENST00000364087 105 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 Y_RNA.418-201ENST00000384029 102 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.14□□□□□ -2.23
VPS28Q9UK41 snoU13.25-201ENST00000458945 104 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 RNU7-21P-201ENST00000459430 62 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 SNORD123-201ENST00000459473 70 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 AC087343.1-201ENST00000477341 475 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 RPS26P48-201ENST00000491713 339 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 RNU6-496P-201ENST00000516145 99 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 RNU6-191P-201ENST00000516295 94 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 RNU6-1007P-201ENST00000516586 107 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.14□□□□□ -2.23
VPS28Q9UK41 MIR4764-201ENST00000580680 88 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 AC005357.1-201ENST00000588399 301 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 HSPE1P19-201ENST00000603327 295 ntBASIC1.14□□□□□ -2.23
VPS28Q9UK41 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
VPS28Q9UK41 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.14□□□□□ -2.23
VPS28Q9UK41 AC008163.1-202ENST00000636004 2889 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 RNA5SP48-201ENST00000363969 126 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 RNU6-1048P-201ENST00000364054 107 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 Y_RNA.380-201ENST00000365663 111 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 RNU6-102P-201ENST00000384485 104 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 Y_RNA.569-201ENST00000384749 103 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 SNORA75.2-201ENST00000391138 150 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 SNORA75.3-201ENST00000391231 150 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 RNU2-14P-201ENST00000411053 191 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 HSPE1P25-201ENST00000455484 251 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 RNU7-90P-201ENST00000459216 62 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 SNORA40.15-201ENST00000516884 107 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 MIR8070-201ENST00000616510 88 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 AL442644.1-201ENST00000454390 3105 ntBASIC1.13□□□□□ -2.23
VPS28Q9UK41 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
VPS28Q9UK41 RNA5SP264-201ENST00000363115 107 ntBASIC1.12□□□□□ -2.23
VPS28Q9UK41 Y_RNA.242-201ENST00000364473 110 ntBASIC1.12□□□□□ -2.23
VPS28Q9UK41 MIR200A-201ENST00000384875 90 ntBASIC1.12□□□□□ -2.23
VPS28Q9UK41 SNORA26.5-201ENST00000391215 123 ntBASIC1.12□□□□□ -2.23
VPS28Q9UK41 MIR548P-201ENST00000408336 84 ntBASIC1.12□□□□□ -2.23
VPS28Q9UK41 NDUFA4P2-201ENST00000489989 244 ntBASIC1.12□□□□□ -2.23
VPS28Q9UK41 UBL5P1-201ENST00000507979 193 ntBASIC1.12□□□□□ -2.23
VPS28Q9UK41 RNU7-41P-201ENST00000515917 61 ntBASIC1.12□□□□□ -2.23
VPS28Q9UK41 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.12□□□□□ -2.23
VPS28Q9UK41 MIR103A2-201ENST00000362154 78 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 RNU6-899P-201ENST00000363947 107 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 SNORD114-24-201ENST00000365029 72 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 SNORA22B-201ENST00000383876 138 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 Y_RNA.394-201ENST00000383942 103 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
VPS28Q9UK41 Y_RNA.581-201ENST00000391017 97 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 MTND4LP30-201ENST00000454092 297 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 RNA5SP102-201ENST00000516865 106 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 RPL23AP91-201ENST00000569211 455 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 AC008507.4-201ENST00000585464 127 ntBASIC1.11□□□□□ -2.23
VPS28Q9UK41 MTCO2P33-201ENST00000402100 465 ntBASIC1.1□□□□□ -2.23
VPS28Q9UK41 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.1□□□□□ -2.23
VPS28Q9UK41 RNU6-764P-201ENST00000516396 105 ntBASIC1.1□□□□□ -2.23
VPS28Q9UK41 Y_RNA.711-201ENST00000516993 102 ntBASIC1.1□□□□□ -2.23
VPS28Q9UK41 MIR4661-201ENST00000582720 75 ntBASIC1.1□□□□□ -2.23
VPS28Q9UK41 AC134026.1-201ENST00000623249 2239 ntBASIC1.09□□□□□ -2.23
VPS28Q9UK41 Y_RNA.238-201ENST00000364441 102 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms