Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC234781.5-201ENST00000508429 271 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 RNU6-346P-201ENST00000516288 111 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 RNA5SP24-201ENST00000516478 95 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 AC112693.2-201ENST00000556538 232 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 MIR5007-201ENST00000583098 95 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 AC046143.2-201ENST00000609789 160 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 MIR6852-201ENST00000621699 66 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 AC027279.3-201ENST00000625055 122 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 RNU6-1084P-201ENST00000362498 107 ntBASIC2.06□□□□□ -2.08
VSX1Q9NZR4 SNORD14E-201ENST00000364009 85 ntBASIC2.06□□□□□ -2.08
VSX1Q9NZR4 RNU6-978P-201ENST00000364371 103 ntBASIC2.06□□□□□ -2.08
VSX1Q9NZR4 RNU6-81P-201ENST00000365608 104 ntBASIC2.06□□□□□ -2.08
VSX1Q9NZR4 RNU6-442P-201ENST00000383968 104 ntBASIC2.06□□□□□ -2.08
VSX1Q9NZR4 Y_RNA.542-201ENST00000384641 111 ntBASIC2.06□□□□□ -2.08
VSX1Q9NZR4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.06□□□□□ -2.08
VSX1Q9NZR4 U2.22-201ENST00000636441 106 ntBASIC2.06□□□□□ -2.08
VSX1Q9NZR4 AL136360.1-201ENST00000503377 1900 ntBASIC2.06□□□□□ -2.08
VSX1Q9NZR4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
VSX1Q9NZR4 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
VSX1Q9NZR4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
VSX1Q9NZR4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
VSX1Q9NZR4 AC008555.8-201ENST00000623602 2168 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
VSX1Q9NZR4 RNA5SP289-201ENST00000362332 137 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 SNORD68-201ENST00000363214 84 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 RNU4-11P-201ENST00000365287 132 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 Y_RNA.486-201ENST00000384398 107 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 RNU6-768P-201ENST00000384683 107 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 RNA5SP109-201ENST00000391010 116 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 RNU2-7P-201ENST00000410794 178 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 MLLT10P1-201ENST00000418346 262 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.05□□□□□ -2.08
VSX1Q9NZR4 MRPS17P9-201ENST00000511924 393 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.05□□□□□ -2.08
VSX1Q9NZR4 RNU2-19P-201ENST00000517288 84 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 AC090142.3-201ENST00000519012 385 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 MIR4672-201ENST00000583126 81 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 MIR6766-201ENST00000622641 72 ntBASIC2.05□□□□□ -2.08
VSX1Q9NZR4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.05□□□□□ -2.08
VSX1Q9NZR4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
VSX1Q9NZR4 SNORD113-1-201ENST00000365321 69 ntBASIC2.04□□□□□ -2.08
VSX1Q9NZR4 SNORA12.1-201ENST00000390873 148 ntBASIC2.04□□□□□ -2.08
VSX1Q9NZR4 RNA5SP501-201ENST00000410990 112 ntBASIC2.04□□□□□ -2.08
VSX1Q9NZR4 RNA5SP233-201ENST00000459153 113 ntBASIC2.04□□□□□ -2.08
VSX1Q9NZR4 AC002984.1-201ENST00000591692 448 ntBASIC2.04□□□□□ -2.08
VSX1Q9NZR4 AC006441.5-201ENST00000612680 209 ntBASIC2.04□□□□□ -2.08
VSX1Q9NZR4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
VSX1Q9NZR4 SNORA16B-201ENST00000364674 135 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 RNU6-1292P-201ENST00000383856 107 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 MIR569-201ENST00000385228 96 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 AC055731.1-201ENST00000474387 401 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 CYCTP-201ENST00000504253 315 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 RNVU1-2-201ENST00000516326 135 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 MIR3162-201ENST00000581818 82 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 AL365205.2-201ENST00000594586 68 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 TUG1_4.1-201ENST00000619464 181 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 AP001340.1-201ENST00000624405 217 ntBASIC2.03□□□□□ -2.08
VSX1Q9NZR4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.03□□□□□ -2.09
VSX1Q9NZR4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
VSX1Q9NZR4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
VSX1Q9NZR4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.02□□□□□ -2.09
VSX1Q9NZR4 RNU6-888P-201ENST00000363010 101 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 RNU6-112P-201ENST00000363599 104 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 RNU6-818P-201ENST00000364837 108 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 SNORA40-201ENST00000388090 126 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 RNA5SP450-201ENST00000411206 102 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.02□□□□□ -2.09
VSX1Q9NZR4 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 AL606517.2-201ENST00000442855 241 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 SNORD45.4-201ENST00000516629 73 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 AC120024.3-201ENST00000603167 156 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.02□□□□□ -2.09
VSX1Q9NZR4 AC091895.1-201ENST00000624494 256 ntBASIC2.02□□□□□ -2.09
VSX1Q9NZR4 AC010332.2-201ENST00000613083 1904 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
VSX1Q9NZR4 MIRLET7G-201ENST00000362280 84 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 Y_RNA.66-201ENST00000362862 102 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 Y_RNA.91-201ENST00000363042 107 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 SNORD50B-201ENST00000364995 70 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 MIR539-201ENST00000365690 78 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 SNORA67.4-201ENST00000384688 142 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 RNU6-360P-201ENST00000390944 104 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 RNA5SP212-201ENST00000391223 107 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 SNRPGP13-201ENST00000442212 177 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 STAG3L5P-204ENST00000443759 179 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.01□□□□□ -2.09
VSX1Q9NZR4 SCARNA15.3-201ENST00000626315 122 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 SCARNA4.1-201ENST00000628597 123 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 MIR3658-201ENST00000636291 56 ntBASIC2.01□□□□□ -2.09
VSX1Q9NZR4 ZNF702P-202ENST00000434269 1966 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 MIR449A-201ENST00000362113 91 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 RNU6-296P-201ENST00000384608 107 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 RNU6-1031P-201ENST00000384773 107 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 MIR624-201ENST00000385217 97 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 Y_RNA.584-201ENST00000391090 114 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 RNU2-40P-201ENST00000410833 196 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 RNA5SP127-201ENST00000411051 133 ntBASIC2□□□□□ -2.09
VSX1Q9NZR4 AC104435.1-201ENST00000483483 166 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 200.5 ms