Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 Y_RNA.293-201ENST00000364908 93 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 RNU6-1318P-201ENST00000365389 103 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 RNU6-1080P-201ENST00000383982 107 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 Y_RNA.515-201ENST00000384535 112 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
HIPK3Q9H422 MIR1298-201ENST00000408783 112 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 RNU2-7P-201ENST00000410794 178 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.84□□□□□ -2.11
HIPK3Q9H422 RNA5SP57-201ENST00000459463 123 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.84□□□□□ -2.11
HIPK3Q9H422 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.84□□□□□ -2.11
HIPK3Q9H422 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.84□□□□□ -2.11
HIPK3Q9H422 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.84□□□□□ -2.11
HIPK3Q9H422 AP002004.2-201ENST00000531656 154 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 MIR8054-201ENST00000620877 86 ntBASIC1.84□□□□□ -2.11
HIPK3Q9H422 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.84□□□□□ -2.11
HIPK3Q9H422 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
HIPK3Q9H422 SNORA1B-201ENST00000362535 133 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 RNU6-674P-201ENST00000363831 107 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 Y_RNA.224-201ENST00000364308 111 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 SNORA4.2-201ENST00000365313 147 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 MIR489-201ENST00000384923 84 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 Y_RNA.621-201ENST00000411065 96 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 Y_RNA.626-201ENST00000411288 95 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 AC009310.1-201ENST00000414414 451 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 RPL31P63-201ENST00000422565 375 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 RNU6-437P-201ENST00000459408 95 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 COX6CP14-201ENST00000469580 174 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 SNORA31.10-201ENST00000516482 106 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 AC100767.1-201ENST00000528178 123 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 MIR4419B-201ENST00000577260 68 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 AL645939.4-201ENST00000604495 135 ntBASIC1.83□□□□□ -2.12
HIPK3Q9H422 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
HIPK3Q9H422 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
HIPK3Q9H422 RNU6-653P-201ENST00000363074 106 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 Y_RNA.199-201ENST00000364014 102 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 Y_RNA.200-201ENST00000364018 102 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 RNU1-42P-201ENST00000364033 160 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 Y_RNA.203-201ENST00000364106 102 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 RNU6-440P-201ENST00000390882 105 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.82□□□□□ -2.12
HIPK3Q9H422 RNU2-56P-201ENST00000516826 190 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 SNORA31.17-201ENST00000516953 127 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 RNU6-794P-201ENST00000517261 64 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 CBX3P4-201ENST00000538909 354 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 AC130289.1-201ENST00000577321 73 ntBASIC1.82□□□□□ -2.12
HIPK3Q9H422 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.82□□□□□ -2.12
HIPK3Q9H422 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HIPK3Q9H422 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
HIPK3Q9H422 RNU4-10P-201ENST00000364383 140 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 Y_RNA.262-201ENST00000364641 102 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 RNU6-392P-201ENST00000364926 101 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 MIR626-201ENST00000385032 94 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 MIR526A2-201ENST00000390198 65 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 RNU6-383P-201ENST00000410864 94 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 AC108059.2-201ENST00000434626 151 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 HSPE1P9-201ENST00000440046 311 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 AL049830.1-201ENST00000468034 425 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.81□□□□□ -2.12
HIPK3Q9H422 RNA5SP481-201ENST00000516814 122 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 MIR4724-201ENST00000579485 89 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 Y_RNA.802-201ENST00000614892 130 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.81□□□□□ -2.12
HIPK3Q9H422 Y_RNA.83-201ENST00000363005 113 ntBASIC1.8□□□□□ -2.12
HIPK3Q9H422 RNU6-60P-201ENST00000364792 103 ntBASIC1.8□□□□□ -2.12
HIPK3Q9H422 SNORA8.3-201ENST00000384679 139 ntBASIC1.8□□□□□ -2.12
HIPK3Q9H422 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.8□□□□□ -2.12
HIPK3Q9H422 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.8□□□□□ -2.12
HIPK3Q9H422 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.8□□□□□ -2.12
HIPK3Q9H422 RNY3P16-201ENST00000516338 101 ntBASIC1.8□□□□□ -2.12
HIPK3Q9H422 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.8□□□□□ -2.12
HIPK3Q9H422 MIR5688-201ENST00000580619 83 ntBASIC1.8□□□□□ -2.12
HIPK3Q9H422 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.8□□□□□ -2.12
HIPK3Q9H422 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
HIPK3Q9H422 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.79□□□□□ -2.12
HIPK3Q9H422 MIR367-201ENST00000362299 68 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 Y_RNA.24-201ENST00000362508 103 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 Y_RNA.253-201ENST00000364562 112 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 Y_RNA.274-201ENST00000364714 101 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 RNU6-200P-201ENST00000364743 107 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 RNU6-950P-201ENST00000384651 107 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 MIR1276-201ENST00000408707 83 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 MIR1278-201ENST00000408753 81 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 RN7SKP200-201ENST00000410564 320 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 snoU13.18-201ENST00000459483 104 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 RNU7-28P-201ENST00000516759 62 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 AC024614.2-201ENST00000577584 372 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 MIR3618-201ENST00000580330 88 ntBASIC1.79□□□□□ -2.12
HIPK3Q9H422 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
HIPK3Q9H422 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
HIPK3Q9H422 MIR411-201ENST00000362239 96 ntBASIC1.78□□□□□ -2.12
HIPK3Q9H422 RNU4-41P-201ENST00000364426 143 ntBASIC1.78□□□□□ -2.12
HIPK3Q9H422 Y_RNA.265-201ENST00000364677 108 ntBASIC1.78□□□□□ -2.12
HIPK3Q9H422 Y_RNA.308-201ENST00000365043 101 ntBASIC1.78□□□□□ -2.12
HIPK3Q9H422 RNU6-969P-201ENST00000383900 105 ntBASIC1.78□□□□□ -2.12
HIPK3Q9H422 Y_RNA.572-201ENST00000384757 98 ntBASIC1.78□□□□□ -2.12
HIPK3Q9H422 SNORA67.6-201ENST00000391093 99 ntBASIC1.78□□□□□ -2.12
HIPK3Q9H422 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.78□□□□□ -2.12
HIPK3Q9H422 STAG3L5P-204ENST00000443759 179 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 521.4 ms