Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 PRR13P7-201ENST00000605538 430 ntBASIC1.43□□□□□ -2.18
ZNF541Q9H0D2 AC037487.3-201ENST00000606668 112 ntBASIC1.43□□□□□ -2.18
ZNF541Q9H0D2 AC004832.4-201ENST00000608952 331 ntBASIC1.43□□□□□ -2.18
ZNF541Q9H0D2 AL161722.3-201ENST00000605789 2983 ntBASIC1.43□□□□□ -2.18
ZNF541Q9H0D2 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
ZNF541Q9H0D2 Y_RNA.19-201ENST00000362462 99 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 RNU4-90P-201ENST00000362773 141 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 snoU2_19.2-201ENST00000363024 80 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 Y_RNA.276-201ENST00000364732 109 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 Y_RNA.422-201ENST00000384054 114 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 Y_RNA.456-201ENST00000384232 111 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 Y_RNA.569-201ENST00000384749 103 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 SNORA12.1-201ENST00000390873 148 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 AL590004.1-201ENST00000405321 300 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 AC093850.1-201ENST00000454121 251 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 U8.19-201ENST00000459095 133 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 RNU6-496P-201ENST00000516145 99 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 RNU7-116P-201ENST00000516940 62 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 MIR4719-201ENST00000585233 84 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 AC006504.6-201ENST00000590142 199 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 AL512605.2-201ENST00000592972 256 ntBASIC1.42□□□□□ -2.18
ZNF541Q9H0D2 MIR373-201ENST00000362273 69 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 SNORA72-201ENST00000384339 132 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 RNU6-738P-201ENST00000384531 106 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 AC027119.1-201ENST00000440877 241 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 Z98949.2-201ENST00000440996 144 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 MTATP8P1-201ENST00000467115 207 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 HMGN1P10-201ENST00000474557 553 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 AC117454.1-201ENST00000491120 168 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 RPL23AP54-201ENST00000495129 419 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 OR9P1P-201ENST00000496431 281 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 RNU6-1143P-201ENST00000516125 104 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 SCARNA15.1-201ENST00000516384 125 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 RNU6-902P-201ENST00000517212 91 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 MIR4295-201ENST00000585286 85 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 AC099654.10-201ENST00000640395 161 ntBASIC1.41□□□□□ -2.18
ZNF541Q9H0D2 RNU6-199P-201ENST00000362954 107 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 RNU4-80P-201ENST00000363200 141 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 Y_RNA.512-201ENST00000384518 102 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 MIR758-201ENST00000390227 88 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 Y_RNA.581-201ENST00000391017 97 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 SNORA53-201ENST00000391141 249 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 AC087343.1-201ENST00000477341 475 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 RPS23P4-201ENST00000487908 423 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 RNU6-322P-201ENST00000516010 103 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 Y_RNA.720-201ENST00000517166 92 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 AC007742.2-201ENST00000618226 398 ntBASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.4□□□□□ -2.18
ZNF541Q9H0D2 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 Y_RNA.310-201ENST00000365063 113 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 Y_RNA.368-201ENST00000365547 113 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 Y_RNA.418-201ENST00000384029 102 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 RNU6-514P-201ENST00000384208 107 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 RNU6-424P-201ENST00000384367 105 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 RNY1P4-201ENST00000384595 115 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 Y_RNA.541-201ENST00000384640 113 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 RNU6-1109P-201ENST00000391187 107 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 MIR891A-201ENST00000401237 79 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 PIGPP3-201ENST00000425307 415 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 DYNLT3P2-201ENST00000442517 295 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 MTND5P22-201ENST00000458380 195 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 RNU6-947P-201ENST00000516264 106 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 RNU6-1116P-201ENST00000517269 99 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 AC008737.2-201ENST00000599446 118 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 AL078604.3-201ENST00000615580 211 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 AL591926.4-201ENST00000616895 298 ntBASIC1.4□□□□□ -2.19
ZNF541Q9H0D2 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.39□□□□□ -2.19
ZNF541Q9H0D2 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.39□□□□□ -2.19
ZNF541Q9H0D2 RNU6-1323P-201ENST00000384025 107 ntBASIC1.39□□□□□ -2.19
ZNF541Q9H0D2 AL731563.1-201ENST00000442202 214 ntBASIC1.39□□□□□ -2.19
ZNF541Q9H0D2 AP003733.2-201ENST00000529409 171 ntBASIC1.39□□□□□ -2.19
ZNF541Q9H0D2 JPX_2.1-201ENST00000614161 69 ntBASIC1.39□□□□□ -2.19
ZNF541Q9H0D2 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.39□□□□□ -2.19
ZNF541Q9H0D2 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 MIR302D-201ENST00000362275 68 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 Y_RNA.145-201ENST00000363527 102 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 U8.7-201ENST00000364940 136 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 RNU6-131P-201ENST00000391144 107 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 MIR548F4-201ENST00000408515 105 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 RPS29P23-201ENST00000458635 123 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 RNU6-922P-201ENST00000516753 99 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 AC024405.2-202ENST00000532731 184 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 MIR7974-201ENST00000615835 79 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 MIR8065-201ENST00000620577 100 ntBASIC1.38□□□□□ -2.19
ZNF541Q9H0D2 Y_RNA.16-201ENST00000362421 102 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 Y_RNA.84-201ENST00000363011 104 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 MIR216A-201ENST00000385063 110 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 MIR802-201ENST00000390235 94 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 AL451046.2-201ENST00000403074 277 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 SNRPGP10-201ENST00000432323 225 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 AC104332.1-201ENST00000440471 797 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 RNU6-1132P-201ENST00000459214 107 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 CYCTP-201ENST00000504253 315 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 AC136628.3-201ENST00000521868 290 ntBASIC1.37□□□□□ -2.19
ZNF541Q9H0D2 AC120024.3-201ENST00000603167 156 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms