Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MIR4778-201ENST00000577635 80 ntBASIC2.81□□□□□ -1.96
TRAIPQ9BWF2 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 RNU6-239P-201ENST00000390990 99 ntBASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 AC004965.1-201ENST00000413033 213 ntBASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 AC074198.2-201ENST00000508153 258 ntBASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 RNA5SP320-201ENST00000516263 124 ntBASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 MIR378D2-201ENST00000580636 98 ntBASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
TRAIPQ9BWF2 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 RNU6-439P-201ENST00000384188 106 ntBASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 MIR676-201ENST00000390702 67 ntBASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 SNRPGP13-201ENST00000442212 177 ntBASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 AP000648.3-201ENST00000623539 4507 ntBASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
TRAIPQ9BWF2 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.78□□□□□ -1.96
TRAIPQ9BWF2 RNU4-84P-201ENST00000364200 139 ntBASIC2.78□□□□□ -1.96
TRAIPQ9BWF2 RNU6-203P-201ENST00000384038 104 ntBASIC2.78□□□□□ -1.96
TRAIPQ9BWF2 Y_RNA.441-201ENST00000384123 112 ntBASIC2.78□□□□□ -1.96
TRAIPQ9BWF2 MIR144-201ENST00000384886 86 ntBASIC2.78□□□□□ -1.96
TRAIPQ9BWF2 MIR548I3-201ENST00000408378 149 ntBASIC2.78□□□□□ -1.96
TRAIPQ9BWF2 MIR548I1-201ENST00000408810 149 ntBASIC2.78□□□□□ -1.96
TRAIPQ9BWF2 RNU6-1135P-201ENST00000411083 103 ntBASIC2.78□□□□□ -1.96
TRAIPQ9BWF2 RNU6-199P-201ENST00000362954 107 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 RNA5SP259-201ENST00000365541 109 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 Y_RNA.464-201ENST00000384282 110 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 MIR30A-201ENST00000385092 71 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 RNA5SP508-201ENST00000411327 119 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 AL356379.1-201ENST00000414105 126 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 AC093850.1-201ENST00000454121 251 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 RPL23AP42-201ENST00000471152 471 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 MIR514B-201ENST00000516774 80 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 SUMO2P16-201ENST00000519475 264 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 AC104465.1-201ENST00000611365 139 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 AC006441.5-201ENST00000612680 209 ntBASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
TRAIPQ9BWF2 RNU6-268P-201ENST00000364174 107 ntBASIC2.76□□□□□ -1.97
TRAIPQ9BWF2 Y_RNA.272-201ENST00000364696 102 ntBASIC2.76□□□□□ -1.97
TRAIPQ9BWF2 MIR513A1-201ENST00000385138 129 ntBASIC2.76□□□□□ -1.97
TRAIPQ9BWF2 MIR136-201ENST00000385207 82 ntBASIC2.76□□□□□ -1.97
TRAIPQ9BWF2 snoU13.9-201ENST00000458927 103 ntBASIC2.76□□□□□ -1.97
TRAIPQ9BWF2 RNU6-693P-201ENST00000516134 107 ntBASIC2.76□□□□□ -1.97
TRAIPQ9BWF2 RNU1-41P-201ENST00000516161 162 ntBASIC2.76□□□□□ -1.97
TRAIPQ9BWF2 RNU1-48P-201ENST00000516400 162 ntBASIC2.76□□□□□ -1.97
TRAIPQ9BWF2 Y_RNA.91-201ENST00000363042 107 ntBASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 SNORA25.6-201ENST00000364121 118 ntBASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 SNORA25.7-201ENST00000364375 127 ntBASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 SNORD24-201ENST00000383884 75 ntBASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 AL359511.1-201ENST00000402970 211 ntBASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 AC015922.2-201ENST00000435593 184 ntBASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 RNU6-322P-201ENST00000516010 103 ntBASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 Y_RNA.666-201ENST00000516187 112 ntBASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 AC015726.2-201ENST00000620112 122 ntBASIC2.75□□□□□ -1.97
TRAIPQ9BWF2 Y_RNA.8-201ENST00000362353 102 ntBASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 RNA5SP456-201ENST00000364002 114 ntBASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 PCNPP3-201ENST00000393579 471 ntBASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 SNORD53-201ENST00000579969 78 ntBASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 AC097639.2-201ENST00000603159 172 ntBASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 AC064859.1-201ENST00000624741 174 ntBASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 MTND1P7-201ENST00000632801 297 ntBASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 AC016717.2-201ENST00000609089 5141 ntBASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
TRAIPQ9BWF2 Z82195.2-201ENST00000612348 18351 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 WWP1P1-201ENST00000466609 2769 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 DEFA7P-201ENST00000382676 285 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 RNU6-449P-201ENST00000383914 107 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 SNORD37.2-201ENST00000391075 66 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 MIR548O-201ENST00000408583 114 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 RNA5SP489-201ENST00000410986 109 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 RNA5SP24-201ENST00000516478 95 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 SNORA31.11-201ENST00000516528 139 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 MIR5092-201ENST00000583139 88 ntBASIC2.73□□□□□ -1.97
TRAIPQ9BWF2 RNU5E-9P-201ENST00000411164 104 ntBASIC2.72□□□□□ -1.97
TRAIPQ9BWF2 RNU6-1270P-201ENST00000517128 108 ntBASIC2.72□□□□□ -1.97
TRAIPQ9BWF2 MIR8063-201ENST00000621930 81 ntBASIC2.72□□□□□ -1.97
TRAIPQ9BWF2 AC106754.2-201ENST00000623006 233 ntBASIC2.72□□□□□ -1.97
TRAIPQ9BWF2 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
TRAIPQ9BWF2 MIR194-1-201ENST00000384892 85 ntBASIC2.71□□□□□ -1.98
TRAIPQ9BWF2 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.71□□□□□ -1.98
TRAIPQ9BWF2 MIR3198-2-201ENST00000577868 80 ntBASIC2.71□□□□□ -1.98
TRAIPQ9BWF2 DNAJC19P2-201ENST00000593340 302 ntBASIC2.71□□□□□ -1.98
TRAIPQ9BWF2 AL096840.1-201ENST00000603287 93 ntBASIC2.71□□□□□ -1.98
TRAIPQ9BWF2 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.71□□□□□ -1.98
TRAIPQ9BWF2 MIR6844-201ENST00000637122 62 ntBASIC2.71□□□□□ -1.98
TRAIPQ9BWF2 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.7□□□□□ -1.98
TRAIPQ9BWF2 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
TRAIPQ9BWF2 MIR6073-201ENST00000352083 89 ntBASIC2.7□□□□□ -1.98
TRAIPQ9BWF2 RNU6-888P-201ENST00000363010 101 ntBASIC2.7□□□□□ -1.98
TRAIPQ9BWF2 Y_RNA.393-201ENST00000383936 102 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms