Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 MRPS17P9-201ENST00000511924 393 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 RNU6-1007P-201ENST00000516586 107 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 MIR4255-201ENST00000579351 72 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 RNY4P28-201ENST00000365281 93 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 RNU6-969P-201ENST00000383900 105 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 RNU6-163P-201ENST00000384396 106 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 MIR802-201ENST00000390235 94 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 SNORD58.1-201ENST00000391313 66 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 RNU4-62P-201ENST00000410125 130 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 RNA5SP489-201ENST00000410986 109 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 RNU6-847P-201ENST00000411115 108 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 OR9P1P-201ENST00000496431 281 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 AC022254.1-201ENST00000567857 235 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 MIR3671-201ENST00000580455 88 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 AC090425.1-201ENST00000610007 140 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 AC021506.2-201ENST00000612354 169 ntBASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.82□□□□□ -2.12
PAAF1Q9BRP4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 Y_RNA.796-201ENST00000364268 102 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 Y_RNA.799-201ENST00000364992 102 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 RNU4-17P-201ENST00000365598 141 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 RNU4-52P-201ENST00000384209 138 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 MIR626-201ENST00000385032 94 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 SNORA12.1-201ENST00000390873 148 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 RNA5SP496-201ENST00000391240 109 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 RNU7-12P-201ENST00000516030 62 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 RNY3P16-201ENST00000516338 101 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 MIR514B-201ENST00000516774 80 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 SNORA44.1-201ENST00000517031 108 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 AC100767.1-201ENST00000528178 123 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 MIR5688-201ENST00000580619 83 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 MIR3935-201ENST00000583472 104 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 MIR8074-201ENST00000615081 81 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 AC068700.1-201ENST00000565862 3754 ntBASIC1.81□□□□□ -2.12
PAAF1Q9BRP4 Y_RNA.83-201ENST00000363005 113 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 Y_RNA.257-201ENST00000364596 102 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 RNU6-923P-201ENST00000364753 107 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 Y_RNA.338-201ENST00000365320 114 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 RNU6-493P-201ENST00000391321 108 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 BTF3P4-201ENST00000418852 495 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 RPL30P13-201ENST00000418873 348 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 CALM2P4-201ENST00000430810 426 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 JTBP1-201ENST00000441314 247 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 COX6CP14-201ENST00000469580 174 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 RNA5SP168-201ENST00000516642 112 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 CBX3P4-201ENST00000538909 354 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 AC009779.6-201ENST00000603972 165 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 MIR502-201ENST00000606349 86 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 SNORD3E-202ENST00000627253 216 ntBASIC1.8□□□□□ -2.12
PAAF1Q9BRP4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 SNORD48-201ENST00000364953 64 ntBASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 Y_RNA.572-201ENST00000384757 98 ntBASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 SUMO2P12-201ENST00000405924 140 ntBASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 RNU2-40P-201ENST00000410833 196 ntBASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 PIGPP3-201ENST00000425307 415 ntBASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 PGBD4P5-201ENST00000445958 426 ntBASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 AL049861.1-201ENST00000603130 150 ntBASIC1.79□□□□□ -2.12
PAAF1Q9BRP4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 RNU6-653P-201ENST00000363074 106 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 RNY1-201ENST00000364228 113 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 snoU2-30.1-201ENST00000365012 70 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 RNU6-203P-201ENST00000384038 104 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 RNU6-424P-201ENST00000384367 105 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 MIR522-201ENST00000385071 87 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 U8.16-201ENST00000391279 133 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 CYCTP-201ENST00000504253 315 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 AC130289.1-201ENST00000577321 73 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 AC120024.3-201ENST00000603167 156 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 AC011921.3-201ENST00000605540 361 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 AL513423.1-201ENST00000621695 132 ntBASIC1.78□□□□□ -2.12
PAAF1Q9BRP4 MIR411-201ENST00000362239 96 ntBASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.229-201ENST00000364347 113 ntBASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 MIR30A-201ENST00000385092 71 ntBASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.587-201ENST00000391210 103 ntBASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 AC245047.8-201ENST00000456455 284 ntBASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 AC099513.1-201ENST00000490423 301 ntBASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 RNU6-1116P-201ENST00000517269 99 ntBASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 AL096840.1-201ENST00000603287 93 ntBASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
PAAF1Q9BRP4 MIR378A-201ENST00000362177 66 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 RNU6-1123P-201ENST00000362347 106 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 SNORD14E-201ENST00000364009 85 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.297-201ENST00000364950 91 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 200.4 ms