Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR516B2-201ENST00000385190 85 ntBASIC2.32□□□□□ -2.04
CCDC140Q96MF4 RN7SKP43-201ENST00000516173 320 ntBASIC2.32□□□□□ -2.04
CCDC140Q96MF4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.32□□□□□ -2.04
CCDC140Q96MF4 AL022345.2-201ENST00000606307 135 ntBASIC2.32□□□□□ -2.04
CCDC140Q96MF4 SNORD3E-202ENST00000627253 216 ntBASIC2.32□□□□□ -2.04
CCDC140Q96MF4 AP000648.3-201ENST00000623539 4507 ntBASIC2.32□□□□□ -2.04
CCDC140Q96MF4 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC140Q96MF4 RNU6-833P-201ENST00000363486 107 ntBASIC2.31□□□□□ -2.04
CCDC140Q96MF4 SNORA25.6-201ENST00000364121 118 ntBASIC2.31□□□□□ -2.04
CCDC140Q96MF4 Y_RNA.410-201ENST00000383992 113 ntBASIC2.31□□□□□ -2.04
CCDC140Q96MF4 MTATP6P21-201ENST00000440681 189 ntBASIC2.31□□□□□ -2.04
CCDC140Q96MF4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC140Q96MF4 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC140Q96MF4 SNORA71.1-201ENST00000364523 117 ntBASIC2.3□□□□□ -2.04
CCDC140Q96MF4 RN7SKP123-201ENST00000410732 291 ntBASIC2.3□□□□□ -2.04
CCDC140Q96MF4 AL158147.1-201ENST00000443970 75 ntBASIC2.3□□□□□ -2.04
CCDC140Q96MF4 PGBD4P5-201ENST00000445958 426 ntBASIC2.3□□□□□ -2.04
CCDC140Q96MF4 RNU6-1061P-201ENST00000516530 99 ntBASIC2.3□□□□□ -2.04
CCDC140Q96MF4 SNORA18.7-201ENST00000516910 131 ntBASIC2.3□□□□□ -2.04
CCDC140Q96MF4 AP003484.1-201ENST00000530974 250 ntBASIC2.3□□□□□ -2.04
CCDC140Q96MF4 AL162274.2-201ENST00000614406 332 ntBASIC2.3□□□□□ -2.04
CCDC140Q96MF4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC140Q96MF4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC140Q96MF4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
CCDC140Q96MF4 MIR422A-201ENST00000362286 90 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 SNORA11.2-201ENST00000408318 127 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 RNU6-938P-201ENST00000411285 103 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 SNORA59A-201ENST00000459326 152 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 AC099513.1-201ENST00000490423 301 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 AC090049.2-201ENST00000550377 109 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC140Q96MF4 MIR4325-201ENST00000583049 90 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 MIR5197-201ENST00000583721 112 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.29□□□□□ -2.04
CCDC140Q96MF4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
CCDC140Q96MF4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
CCDC140Q96MF4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC140Q96MF4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
CCDC140Q96MF4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC140Q96MF4 MIR342-201ENST00000362212 99 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 SNORA16B-201ENST00000364674 135 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 SNORA9.2-201ENST00000365361 133 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC140Q96MF4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC140Q96MF4 SCARNA15-202ENST00000516881 127 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 RNU7-181P-201ENST00000517234 74 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC140Q96MF4 AC133485.4-201ENST00000561835 220 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 AC138907.4-201ENST00000570107 226 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 MIR3605-201ENST00000583214 100 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC140Q96MF4 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 AC007336.1-201ENST00000576365 3828 ntBASIC2.28□□□□□ -2.04
CCDC140Q96MF4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
CCDC140Q96MF4 RNA5SP205-201ENST00000364653 136 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 Y_RNA.351-201ENST00000365436 96 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 MIR660-201ENST00000385235 97 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 RNU6-360P-201ENST00000390944 104 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 RNU6-735P-201ENST00000410612 107 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC140Q96MF4 Y_RNA.651-201ENST00000459380 103 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 AP004217.1-201ENST00000480579 346 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 RNA5SP341-201ENST00000516261 117 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 RNA5SP76-201ENST00000516277 87 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 RNU6-659P-201ENST00000516454 104 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 RNU7-70P-201ENST00000516941 66 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 AC078899.2-201ENST00000595282 212 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 AL513423.1-201ENST00000621695 132 ntBASIC2.27□□□□□ -2.05
CCDC140Q96MF4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC140Q96MF4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC140Q96MF4 Y_RNA.241-201ENST00000364470 117 ntBASIC2.26□□□□□ -2.05
CCDC140Q96MF4 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC140Q96MF4 S100A11P2-201ENST00000467589 312 ntBASIC2.26□□□□□ -2.05
CCDC140Q96MF4 RNA5SP236-201ENST00000516169 116 ntBASIC2.26□□□□□ -2.05
CCDC140Q96MF4 ZNF861P-201ENST00000588126 639 ntBASIC2.26□□□□□ -2.05
CCDC140Q96MF4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC140Q96MF4 MIR424-201ENST00000362227 98 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 RNU6-203P-201ENST00000384038 104 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 RNU1-138P-201ENST00000384093 164 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 MIR452-201ENST00000385020 85 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 MIR136-201ENST00000385207 82 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 RNA5SP212-201ENST00000391223 107 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 U8.17-201ENST00000391292 132 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 COTL1P1-201ENST00000422309 375 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 SNX2P2-201ENST00000424553 323 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 AC087499.4-201ENST00000448505 178 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 AL021397.1-201ENST00000451806 248 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 RN7SKP179-201ENST00000516126 217 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 SUMO2P16-201ENST00000519475 264 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
CCDC140Q96MF4 AC107016.2-201ENST00000547968 190 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 AC106754.2-201ENST00000623006 233 ntBASIC2.25□□□□□ -2.05
CCDC140Q96MF4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC140Q96MF4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC140Q96MF4 RNU6-457P-201ENST00000363999 107 ntBASIC2.24□□□□□ -2.05
CCDC140Q96MF4 RNU6-647P-201ENST00000364243 107 ntBASIC2.24□□□□□ -2.05
CCDC140Q96MF4 Y_RNA.440-201ENST00000384120 114 ntBASIC2.24□□□□□ -2.05
CCDC140Q96MF4 Y_RNA.494-201ENST00000384432 111 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms