Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC134026.1-201ENST00000623249 2239 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 MIR103A2-201ENST00000362154 78 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 RNU6-1084P-201ENST00000362498 107 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 Y_RNA.39-201ENST00000362620 98 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 RNU4-80P-201ENST00000363200 141 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 Y_RNA.112-201ENST00000363250 102 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 RNU4-50P-201ENST00000364361 141 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 snoU2-30.1-201ENST00000365012 70 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 SNORD42.2-201ENST00000365570 69 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 Y_RNA.395-201ENST00000383945 109 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 MIR570-201ENST00000384917 97 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 RNU6-131P-201ENST00000391144 107 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 RNU7-141P-201ENST00000459304 62 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 AC108729.3-201ENST00000513484 108 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 RNU6-976P-201ENST00000516086 111 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 RNU7-110P-201ENST00000516891 62 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 AC109810.1-201ENST00000534066 224 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 AL133255.1-201ENST00000606374 441 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 Y_RNA.772-201ENST00000606692 102 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 AC011373.1-201ENST00000607270 237 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 AC108706.1-201ENST00000611053 297 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 AC006157.1-201ENST00000611750 366 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 MIR548AY-201ENST00000617669 107 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 SEPT14P17-201ENST00000617978 177 ntBASIC0.66□□□□□ -2.3
CCDC54Q8NEL0 Y_RNA.222-201ENST00000364264 102 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.330-201ENST00000365230 109 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.471-201ENST00000384312 102 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 MIR200A-201ENST00000384875 90 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 PMCHL1-202ENST00000423102 261 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 HSPE1P25-201ENST00000455484 251 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 AC036111.3-201ENST00000526389 112 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 AC040926.1-201ENST00000530195 238 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 MIR6516-201ENST00000630554 81 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 MTND4P29-201ENST00000503122 1372 ntBASIC0.65□□□□□ -2.31
CCDC54Q8NEL0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 MIR369-201ENST00000362155 70 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 RNU6-268P-201ENST00000364174 107 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 SNORD14.1-201ENST00000365609 90 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.383-201ENST00000383855 97 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 SNORA72.4-201ENST00000384174 132 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.509-201ENST00000384506 99 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 MIR608-201ENST00000384820 100 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 MIR942-201ENST00000401111 86 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 RNA5SP95-201ENST00000410319 137 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 RNU6-710P-201ENST00000410424 105 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 RNU6-121P-201ENST00000410525 99 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 MTND4P19-201ENST00000446659 478 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 SNORD11-201ENST00000459124 84 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 RPL23AP54-201ENST00000495129 419 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 MIR4498-201ENST00000577599 66 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 AC008507.4-201ENST00000585464 127 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 AC005357.1-201ENST00000588399 301 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 RNU6-94P-201ENST00000607728 107 ntBASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.64□□□□□ -2.31
CCDC54Q8NEL0 RNY1P10-201ENST00000363268 113 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.439-201ENST00000384119 94 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 MIR1302-11-201ENST00000408051 138 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 MIR1302-9-201ENST00000408365 138 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 MIR1302-10-201ENST00000408734 138 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 RPS3AP1-201ENST00000413190 320 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 U8.20-201ENST00000459445 131 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 RNU6-191P-201ENST00000516295 94 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 RNU7-43P-201ENST00000516554 64 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 RNU7-116P-201ENST00000516940 62 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.715-201ENST00000517082 110 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 MIR4698-201ENST00000577795 80 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 MIR4300-201ENST00000581016 96 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 AC104695.3-201ENST00000604052 296 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 RAC1P9-201ENST00000604990 392 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 MIR1302-2-201ENST00000607096 138 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.804-201ENST00000615262 101 ntBASIC0.63□□□□□ -2.31
CCDC54Q8NEL0 MIR337-201ENST00000362281 93 ntBASIC0.62□□□□□ -2.31
CCDC54Q8NEL0 RNU6-369P-201ENST00000362515 102 ntBASIC0.62□□□□□ -2.31
CCDC54Q8NEL0 SNORA36B-201ENST00000410438 131 ntBASIC0.62□□□□□ -2.31
CCDC54Q8NEL0 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.62□□□□□ -2.31
CCDC54Q8NEL0 MTND5P15-201ENST00000434246 349 ntBASIC0.62□□□□□ -2.31
CCDC54Q8NEL0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.62□□□□□ -2.31
CCDC54Q8NEL0 Y_RNA.639-201ENST00000458981 102 ntBASIC0.62□□□□□ -2.31
CCDC54Q8NEL0 AC008133.2-201ENST00000624540 351 ntBASIC0.62□□□□□ -2.31
CCDC54Q8NEL0 RNU6-674P-201ENST00000363831 107 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 RNU6-450P-201ENST00000364654 107 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 RNU6-474P-201ENST00000384243 107 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 AC236972.2-201ENST00000434979 310 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 MTATP6P23-201ENST00000440153 476 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 HMGN2P32-201ENST00000444648 269 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 U8.19-201ENST00000459095 133 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 TRMT112P2-201ENST00000512910 132 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 RNU4-57P-201ENST00000515980 135 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 RNU6-496P-201ENST00000516145 99 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 RNU6-397P-201ENST00000516226 104 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 RNU6-830P-201ENST00000516353 107 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 RNU6-764P-201ENST00000516396 105 ntBASIC0.61□□□□□ -2.31
CCDC54Q8NEL0 RNU7-181P-201ENST00000517234 74 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms