Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SNORA6-201ENST00000384033 151 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 MIR520A-201ENST00000384862 85 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 AC009310.1-201ENST00000414414 451 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 AL049830.1-201ENST00000468034 425 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 Y_RNA.797-201ENST00000515977 94 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 AC022217.4-201ENST00000604389 163 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 AL391903.3-201ENST00000612158 163 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 MIR6779-201ENST00000617283 64 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.4□□□□□ -2.02
SMC1BQ8NDV3 SNORA1B-201ENST00000362535 133 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.191-201ENST00000363972 113 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 snoU2_19.4-201ENST00000364329 80 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 RNU6-209P-201ENST00000384118 107 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 RNU6-950P-201ENST00000384651 107 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.555-201ENST00000384673 110 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.572-201ENST00000384757 98 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 RNA5SP109-201ENST00000391010 116 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 AC245047.8-201ENST00000456455 284 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.662-201ENST00000516028 97 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 RNU6-1007P-201ENST00000516586 107 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 AC022559.1-201ENST00000520905 205 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 MIR4744-201ENST00000581563 82 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 RMST_2.1-201ENST00000617263 136 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.4□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.182-201ENST00000363880 111 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 RN7SKP101-201ENST00000411376 320 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 AC055731.1-201ENST00000474387 401 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 HMGN1P7-201ENST00000491722 313 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 RNA5SP220-201ENST00000516298 104 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 RNU6-861P-201ENST00000516745 106 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 RNU7-28P-201ENST00000516759 62 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.714-201ENST00000517065 90 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 SUB1P4-201ENST00000566062 339 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 RPL23AP91-201ENST00000569211 455 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 AL078603.1-201ENST00000603824 313 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
SMC1BQ8NDV3 ZNF720P1-201ENST00000562403 1939 ntBASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 SNORA63D-201ENST00000364359 132 ntBASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.265-201ENST00000364677 108 ntBASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 RNU6-1228P-201ENST00000391014 107 ntBASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 AL627390.1-201ENST00000396055 340 ntBASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 RPS27P1-201ENST00000450552 247 ntBASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 SNORA28-201ENST00000606769 126 ntBASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 AC012640.5-201ENST00000623897 319 ntBASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 U6.106-201ENST00000636360 105 ntBASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.150-201ENST00000363562 102 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 RNU6-1209P-201ENST00000363655 107 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.253-201ENST00000364562 112 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 RNU6-392P-201ENST00000364926 101 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.327-201ENST00000365201 102 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 RNY3P5-201ENST00000384127 102 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 MIR1278-201ENST00000408753 81 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 AL606517.2-201ENST00000442855 241 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 MIR4303-201ENST00000581299 66 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 MIR4452-201ENST00000583004 71 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 AL512598.1-201ENST00000610158 273 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 MIR8054-201ENST00000620877 86 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 MIR6734-201ENST00000621166 68 ntBASIC2.37□□□□□ -2.03
SMC1BQ8NDV3 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 RNU6-682P-201ENST00000363843 106 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 RNU6-886P-201ENST00000384319 105 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 RNU6-440P-201ENST00000390882 105 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 RNU6-578P-201ENST00000390980 103 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 RNA5SP482-201ENST00000391269 118 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 AL606845.1-201ENST00000404881 255 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 RN7SKP200-201ENST00000410564 320 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 SNRPGP10-201ENST00000432323 225 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 AC090255.1-201ENST00000495779 349 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 RNU6-1219P-201ENST00000516143 112 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 RNA5SP481-201ENST00000516814 122 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 RNU6-453P-201ENST00000516819 85 ntBASIC2.36□□□□□ -2.03
SMC1BQ8NDV3 MIR126-201ENST00000362291 85 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.75-201ENST00000362927 97 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 RNU6-112P-201ENST00000363599 104 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.240-201ENST00000364469 95 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 RNU6-275P-201ENST00000364910 107 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 RNU4-52P-201ENST00000384209 138 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 Y_RNA.587-201ENST00000391210 103 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 MIR548I3-201ENST00000408378 149 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 MIR548I1-201ENST00000408810 149 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 HMGN2P38-201ENST00000423806 265 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 RNU7-95P-201ENST00000459222 64 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 SCARNA8-201ENST00000515924 131 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 MRPS18CP4-201ENST00000535821 231 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 AL021707.8-201ENST00000609428 183 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 AC084768.2-201ENST00000622736 221 ntBASIC2.35□□□□□ -2.03
SMC1BQ8NDV3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms