Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNA5SP127-201ENST00000411051 133 ntBASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 RNA5SP200-201ENST00000516360 103 ntBASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 AL359075.3-201ENST00000613288 217 ntBASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 MIR6129-201ENST00000616087 109 ntBASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 AC018630.2-201ENST00000534866 2403 ntBASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USHBP1Q8N6Y0 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 RNU6-647P-201ENST00000364243 107 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 RNA5SP467-201ENST00000391274 118 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 SNRPGP10-201ENST00000432323 225 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 AL353689.1-201ENST00000438895 199 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 NDUFA4P2-201ENST00000489989 244 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 RNU6-1041P-201ENST00000516254 102 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 RNU1-142P-201ENST00000516682 145 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 AL365205.2-201ENST00000594586 68 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.783-201ENST00000613546 102 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 MIR338-201ENST00000636369 67 ntBASIC2.82□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.66-201ENST00000362862 102 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 RNU6-309P-201ENST00000364573 106 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 U8.13-201ENST00000390842 128 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 SRIP3-201ENST00000413200 219 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 AL445646.1-201ENST00000431784 216 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 AC018868.1-201ENST00000491307 315 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 RNU6-1061P-201ENST00000516530 99 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.709-201ENST00000516952 92 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 RNU6-341P-201ENST00000516973 96 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 RNU7-128P-201ENST00000517247 62 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 RNU1-104P-201ENST00000517280 175 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 RNU2-60P-201ENST00000517290 128 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 AL358944.1-201ENST00000528537 144 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 MTND5P34-201ENST00000568888 325 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 AL353997.5-201ENST00000618886 171 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 MIR6079-201ENST00000635807 62 ntBASIC2.81□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.242-201ENST00000364473 110 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 SNORA40.5-201ENST00000391061 128 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 MIR891A-201ENST00000401237 79 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 EDDM3CP-201ENST00000415977 425 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 MTATP6P21-201ENST00000440681 189 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 MRPS17P9-201ENST00000511924 393 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 RNU5E-3P-201ENST00000515913 68 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.714-201ENST00000517065 90 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 CYCSP26-201ENST00000534107 320 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 MIR6845-201ENST00000613182 61 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 MIR6132-201ENST00000622083 109 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 AC080100.1-201ENST00000624239 5356 ntBASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
USHBP1Q8N6Y0 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.52-201ENST00000362760 96 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.253-201ENST00000364562 112 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.267-201ENST00000364679 109 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 SNORA25B-201ENST00000365507 128 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 DEFA7P-201ENST00000382676 285 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.617-201ENST00000410920 90 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 RNU1-131P-201ENST00000458943 161 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 RNU6-1291P-201ENST00000516591 104 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 RNU6-826P-201ENST00000516827 104 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 RNU6-295P-201ENST00000516901 104 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 AC004486.1-201ENST00000546846 233 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 AL353149.1-201ENST00000610667 244 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 ZNF271P-202ENST00000465539 1970 ntBASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.79□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.99-201ENST00000363138 105 ntBASIC2.78□□□□□ -1.96
USHBP1Q8N6Y0 RNU1-138P-201ENST00000384093 164 ntBASIC2.78□□□□□ -1.96
USHBP1Q8N6Y0 SNORA80E-201ENST00000384744 137 ntBASIC2.78□□□□□ -1.96
USHBP1Q8N6Y0 Y_RNA.630-201ENST00000411370 108 ntBASIC2.78□□□□□ -1.96
USHBP1Q8N6Y0 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.78□□□□□ -1.96
USHBP1Q8N6Y0 AC007751.1-201ENST00000529260 376 ntBASIC2.78□□□□□ -1.96
USHBP1Q8N6Y0 SNRPGP19-201ENST00000603826 189 ntBASIC2.78□□□□□ -1.96
USHBP1Q8N6Y0 AC108081.1-201ENST00000604358 221 ntBASIC2.78□□□□□ -1.96
USHBP1Q8N6Y0 U6.108-201ENST00000637764 58 ntBASIC2.78□□□□□ -1.96
USHBP1Q8N6Y0 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 SNORA63.4-201ENST00000362763 126 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-508P-201ENST00000363231 103 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 SNORD114-6-201ENST00000364393 72 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 RNA5SP125-201ENST00000364843 120 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 SNORD58C-201ENST00000365223 64 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 RNU6-1292P-201ENST00000383856 107 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 SNORA22-201ENST00000383907 134 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 RNU1-109P-201ENST00000383960 147 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 SNORA1-201ENST00000384107 130 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 SNORA12.1-201ENST00000390873 148 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 HMGN2P35-201ENST00000412164 270 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 RNU7-94P-201ENST00000459576 63 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 RPS26P45-201ENST00000471748 340 ntBASIC2.77□□□□□ -1.97
USHBP1Q8N6Y0 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms