Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SNORD113.3-201ENST00000364630 78 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.314-201ENST00000365114 102 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.368-201ENST00000365547 113 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 RNU6-890P-201ENST00000384121 107 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 SNORA2B-201ENST00000384583 137 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 RNU6-1199P-201ENST00000411249 104 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 AC092628.1-201ENST00000436250 252 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 AC098869.1-201ENST00000481627 292 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 RNU6-1012P-201ENST00000516606 109 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.691-201ENST00000516611 103 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 AC011195.1-201ENST00000578177 177 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 JPX_2.1-201ENST00000614161 69 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 RNU6-845P-201ENST00000362578 103 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.148-201ENST00000363557 117 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 RNU6-1188P-201ENST00000363795 107 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.329-201ENST00000365209 107 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 MIR1197-201ENST00000408818 88 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 RNU6-470P-201ENST00000515954 104 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 AC004817.2-201ENST00000561794 651 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 AC133104.2-201ENST00000615272 193 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 U2.1-201ENST00000618978 145 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 TPTEP1-208ENST00000636884 213 ntBASIC0.59□□□□□ -2.31
HDDC3Q8N4P3 RNA5SP62-201ENST00000363457 110 ntBASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 Y_RNA.146-201ENST00000363549 102 ntBASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 RNU1-119P-201ENST00000391122 165 ntBASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 MCFD2P1-201ENST00000417812 300 ntBASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 AC098934.3-201ENST00000430450 190 ntBASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 RNU7-116P-201ENST00000516940 62 ntBASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 RN7SKP295-201ENST00000517264 153 ntBASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 AC022441.3-201ENST00000605737 136 ntBASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 AL355073.2-201ENST00000612106 557 ntBASIC0.58□□□□□ -2.32
HDDC3Q8N4P3 Y_RNA.166-201ENST00000363730 102 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 RNU6-654P-201ENST00000364373 107 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 Y_RNA.341-201ENST00000365341 102 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 Y_RNA.370-201ENST00000365589 108 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 RNU6-945P-201ENST00000383947 107 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 RNA5SP222-201ENST00000411039 105 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 POLR3GP1-201ENST00000594073 261 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 MIR6516-201ENST00000630554 81 ntBASIC0.57□□□□□ -2.32
HDDC3Q8N4P3 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 MIR1-1-201ENST00000362147 71 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 RNA5SP499-201ENST00000363982 119 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 RNU6-442P-201ENST00000383968 104 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 SNORA36.2-201ENST00000384004 127 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 RNU6-1323P-201ENST00000384025 107 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 SNORD105-201ENST00000386910 85 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 MIR1827-201ENST00000408549 66 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 AC005042.3-201ENST00000453230 174 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 Y_RNA.653-201ENST00000459091 95 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 RNU6-966P-201ENST00000516479 104 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 MIR2115-201ENST00000516657 100 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 AC018659.1-201ENST00000551083 169 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 AC087685.1-201ENST00000587507 141 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 AC012433.1-201ENST00000588916 398 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 AC243829.6-201ENST00000612652 106 ntBASIC0.56□□□□□ -2.32
HDDC3Q8N4P3 RNU6-1175P-201ENST00000365200 107 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 Y_RNA.433-201ENST00000384089 102 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 SNORD28B-201ENST00000390993 75 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 AC024067.1-201ENST00000426199 223 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 AC099799.1-201ENST00000439809 192 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 AL392103.1-201ENST00000447000 198 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 RNU6-911P-201ENST00000516523 104 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 MIR548AR-201ENST00000582191 57 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 RBM11P1-201ENST00000604951 799 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 U6.92-201ENST00000636464 89 ntBASIC0.55□□□□□ -2.32
HDDC3Q8N4P3 Y_RNA.27-201ENST00000362540 103 ntBASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 Y_RNA.203-201ENST00000364106 102 ntBASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 Y_RNA.279-201ENST00000364763 95 ntBASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 MIR92A1-201ENST00000385233 78 ntBASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 RNU6-876P-201ENST00000391295 104 ntBASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 RNA5SP95-201ENST00000410319 137 ntBASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 RNU6-613P-201ENST00000410412 108 ntBASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 AC244098.3-201ENST00000424803 96 ntBASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 RPL23AP54-201ENST00000495129 419 ntBASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
HDDC3Q8N4P3 MIR1302-7-201ENST00000408841 72 ntBASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 AC114737.2-201ENST00000421583 173 ntBASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 RNU6-559P-201ENST00000516151 98 ntBASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 SNORA62.5-201ENST00000516634 120 ntBASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 AP003484.1-201ENST00000530974 250 ntBASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 AL360085.1-201ENST00000604713 532 ntBASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 Pinc.1-201ENST00000616452 154 ntBASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 uc_338.17-201ENST00000619633 179 ntBASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
HDDC3Q8N4P3 RNU6-396P-201ENST00000365369 105 ntBASIC0.52□□□□□ -2.33
HDDC3Q8N4P3 Y_RNA.456-201ENST00000384232 111 ntBASIC0.52□□□□□ -2.33
HDDC3Q8N4P3 PDCL2P1-201ENST00000419302 352 ntBASIC0.52□□□□□ -2.33
HDDC3Q8N4P3 AC024405.2-202ENST00000532731 184 ntBASIC0.52□□□□□ -2.33
HDDC3Q8N4P3 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 153.3 ms