Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
UBE3DQ7Z6J8 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
UBE3DQ7Z6J8 Y_RNA.369-201ENST00000365568 117 ntBASIC2.7□□□□□ -1.98
UBE3DQ7Z6J8 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.7□□□□□ -1.98
UBE3DQ7Z6J8 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.7□□□□□ -1.98
UBE3DQ7Z6J8 AC107016.2-201ENST00000547968 190 ntBASIC2.7□□□□□ -1.98
UBE3DQ7Z6J8 MIR3683-201ENST00000580847 82 ntBASIC2.7□□□□□ -1.98
UBE3DQ7Z6J8 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
UBE3DQ7Z6J8 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.7□□□□□ -1.98
UBE3DQ7Z6J8 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 AC104389.3-201ENST00000445629 235 ntBASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-830P-201ENST00000516353 107 ntBASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 RNY4P20-201ENST00000516678 93 ntBASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-537P-201ENST00000517277 103 ntBASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 AC021443.1-201ENST00000604478 211 ntBASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
UBE3DQ7Z6J8 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 AL442644.1-201ENST00000454390 3105 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 Y_RNA.328-201ENST00000365208 113 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 SNORA11.1-201ENST00000408133 129 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-938P-201ENST00000411285 103 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 AL135938.1-201ENST00000443141 297 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 AC003982.1-202ENST00000469928 248 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 SNORD36C-201ENST00000516733 66 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 SNORA18.7-201ENST00000516910 131 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 IGKV3-31-201ENST00000523109 329 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 AC015726.2-201ENST00000620112 122 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 MIR8054-201ENST00000620877 86 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 AC022513.1-201ENST00000624512 117 ntBASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
UBE3DQ7Z6J8 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 Y_RNA.298-201ENST00000364960 107 ntBASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-1014P-201ENST00000383940 103 ntBASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-756P-201ENST00000383997 107 ntBASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-440P-201ENST00000390882 105 ntBASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 AL606517.2-201ENST00000442855 241 ntBASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 RNA5SP281-201ENST00000516504 135 ntBASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 AC005000.2-201ENST00000605468 310 ntBASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
UBE3DQ7Z6J8 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 RNU6-424P-201ENST00000384367 105 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 Y_RNA.549-201ENST00000384657 102 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 U8.17-201ENST00000391292 132 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 AL590004.2-201ENST00000404787 371 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 RN7SKP200-201ENST00000410564 320 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 STAG3L5P-204ENST00000443759 179 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 RPL39P34-201ENST00000477141 156 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 SNORA74D-201ENST00000516404 141 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 RNA5SP137-201ENST00000516833 135 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 AC079600.2-201ENST00000550076 130 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 MIR5582-201ENST00000579697 68 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 MIR4679-1-201ENST00000637619 75 ntBASIC2.66□□□□□ -1.98
UBE3DQ7Z6J8 AP006437.1-201ENST00000641440 3685 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 Y_RNA.351-201ENST00000365436 96 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 Y_RNA.362-201ENST00000365518 110 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 RNU6-163P-201ENST00000384396 106 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 RNA5SP109-201ENST00000391010 116 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 AL035398.1-201ENST00000430869 322 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 Z96811.1-201ENST00000445880 108 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 ZNF861P-201ENST00000588126 639 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 AL035470.1-201ENST00000622571 220 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 AC091932.4-201ENST00000623386 200 ntBASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.65□□□□□ -1.99
UBE3DQ7Z6J8 AC108206.1-201ENST00000570186 4159 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 MIRLET7C-201ENST00000362160 84 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 RNU1-112P-201ENST00000364401 164 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 SNORA51.5-201ENST00000384126 131 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 Y_RNA.544-201ENST00000384650 113 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 AL034345.1-201ENST00000407768 123 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 RNU7-164P-201ENST00000459221 62 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 AC114811.1-201ENST00000507207 168 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 AC084364.2-201ENST00000546924 395 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 MIR3126-201ENST00000577443 74 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 MIR3163-201ENST00000581592 73 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 MIR4305-201ENST00000583252 102 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 AC078899.2-201ENST00000595282 212 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 AL033523.1-201ENST00000605153 153 ntBASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
UBE3DQ7Z6J8 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
UBE3DQ7Z6J8 AC245060.5-201ENST00000610778 3293 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 189.1 ms