Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SNORD115-24-201ENST00000363528 82 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-961P-201ENST00000363893 105 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 SNORA32.1-201ENST00000364514 115 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 MIR514A2-201ENST00000385131 88 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 MIR514A3-201ENST00000385132 88 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 MIR643-201ENST00000385267 97 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 MT-TQ-201ENST00000387372 72 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 MIR873-201ENST00000401120 77 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-710P-201ENST00000410424 105 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-256P-201ENST00000516747 97 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 RNU7-181P-201ENST00000517234 74 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 MIR4273-201ENST00000582824 84 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 AC121247.2-201ENST00000604776 136 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 AC022306.2-201ENST00000617563 647 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 Y_RNA.142-201ENST00000363491 102 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 SNORD114-12-201ENST00000365400 75 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 MTCO3P40-201ENST00000392516 676 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 AL390729.2-201ENST00000416137 156 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 SNORD57-201ENST00000448188 72 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 SNORA40.12-201ENST00000516329 111 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-1088P-201ENST00000516850 104 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 AL162376.1-201ENST00000624117 175 ntBASIC-0.27□□□□□ -2.45
CCDC88AQ3V6T2 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 Y_RNA.456-201ENST00000384232 111 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-136P-201ENST00000384663 107 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-205P-201ENST00000390858 107 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 MIR938-201ENST00000401216 83 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 RNU6ATAC6P-201ENST00000408132 126 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-1156P-201ENST00000410365 100 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 MTND2P22-201ENST00000444325 1033 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 SNORA40.9-201ENST00000515895 93 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-1170P-201ENST00000515974 106 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 Y_RNA.665-201ENST00000516177 98 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 RPL23AP91-201ENST00000569211 455 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 MIR548AX-201ENST00000580117 73 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 MTND1P7-201ENST00000632801 297 ntBASIC-0.28□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-1301P-201ENST00000362724 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.530-201ENST00000384587 101 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 AC093424.1-201ENST00000604999 338 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 AL603755.1-201ENST00000619504 163 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 SNORA36.1-201ENST00000363424 132 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-767P-201ENST00000384132 107 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 MIR593-201ENST00000384856 100 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-747P-201ENST00000390928 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-159P-201ENST00000391080 106 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-241P-201ENST00000391148 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-447P-201ENST00000410293 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-1118P-201ENST00000410382 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-1076P-201ENST00000410397 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-355P-201ENST00000410427 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-791P-201ENST00000410467 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-705P-201ENST00000410601 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-1100P-201ENST00000410691 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-860P-201ENST00000410860 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-1001P-201ENST00000411265 100 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-1217P-201ENST00000411276 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-785P-201ENST00000411324 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 SNORD83.1-201ENST00000411362 77 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 FCF1P9-201ENST00000412546 282 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 AC090844.1-201ENST00000422019 156 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 RNU7-116P-201ENST00000516940 62 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 AP003357.1-201ENST00000604497 148 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 U6.90-201ENST00000614007 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 U6.70-201ENST00000620287 104 ntBASIC-0.29□□□□□ -2.46
CCDC88AQ3V6T2 SNORD45.3-201ENST00000363836 72 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 SNORA63C-201ENST00000364578 129 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-740P-201ENST00000364734 105 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 RNA5SP117-201ENST00000365294 118 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-842P-201ENST00000384269 107 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-318P-201ENST00000384283 103 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 SNORA40.5-201ENST00000391061 128 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 RNU4-55P-201ENST00000410731 137 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 RNU4-63P-201ENST00000411313 118 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 MTND1P17-201ENST00000448961 204 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 RNU7-165P-201ENST00000458864 60 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 MTND1P24-201ENST00000552175 861 ntBASIC-0.3□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.364-201ENST00000365532 101 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.376-201ENST00000365638 108 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 RNU2-61P-201ENST00000411069 191 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-373P-201ENST00000411247 98 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 RNU7-156P-201ENST00000517214 74 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 AC005899.2-201ENST00000584353 90 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 AC005176.2-201ENST00000596933 147 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 AC097520.1-201ENST00000624435 385 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 RNU6-1115P-201ENST00000362490 106 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.405-201ENST00000383979 100 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 SNORD116-9-201ENST00000384000 95 ntBASIC-0.31□□□□□ -2.46
CCDC88AQ3V6T2 Y_RNA.451-201ENST00000384200 100 ntBASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms